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Resource

Alignathon: a competitive assessment of whole-genome alignment methods

  • Dent Earl
  • Ngan Nguyen
  • Glenn Hickey
  • Robert S. Harris
  • Stephen Fitzgerald
  • Kathryn Beal Igor Seledtsov Vladimir Molodtsov Brian J. Raney Hiram Clawson Jaebum Kim Carsten Kemena Jia-Ming Chang Ionas Erb Alexander Poliakov Minmei Hou Javier Herrero William James Kent Victor Solovyev Aaron E. Darling Jian Ma Cedric Notredame
  • ... [+17 authors] ...,
  • Michael Brudno
  • Inna Dubchak
  • David Haussler
  • Benedict Paten
  • First Published October 1, 2014
Resource

Multiple whole-genome alignments without a reference organism

  • Inna Dubchak
  • Alexander Poliakov
  • Andrey Kislyuk
  • Michael Brudno
  • First Published January 28, 2009
Methods

SyMAP: A system for discovering and viewing syntenic regions of FPC maps

  • Carol Soderlund
  • William Nelson
  • Austin Shoemaker
  • Andrew Paterson
  • First Published September 1, 2006
RESOURCE

Oryza bacterial artificial chromosome library resource: Construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza" > The Oryza bacterial artificial chromosome library resource: Construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza

  • Jetty S.S. Ammiraju
  • Meizhong Luo
  • José L. Goicoechea
  • Wenming Wang
  • Dave Kudrna
  • Christopher Mueller Jayson Talag HyeRan Kim Nicholas B. Sisneros Barbara Blackmon Eric Fang Jeffery B. Tomkins Darshan Brar David MacKill Susan McCouch Nori Kurata Georgina Lambert David W. Galbraith K. Arumuganathan Kiran Rao Jason G. Walling Navdeep Gill Yeisoo Yu
  • ... [+18 authors] ...,
  • Phillip SanMiguel
  • Carol Soderlund
  • Scott Jackson
  • Rod A. Wing
  • First Published December 12, 2005
ARTICLE

Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution" > Comparative genome sequencing of Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution

  • Stephen Richards
  • Yue Liu
  • Brian R. Bettencourt
  • Pavel Hradecky
  • Stan Letovsky
  • Rasmus Nielsen Kevin Thornton Melissa J. Hubisz Rui Chen Richard P. Meisel Olivier Couronne Sujun Hua Mark A. Smith Peili Zhang Jing Liu Harmen J. Bussemaker Marinus F. van Batenburg Sally L. Howells Steven E. Scherer Erica Sodergren Beverly B. Matthews Madeline A. Crosby Andrew J. Schroeder Daniel Ortiz-Barrientos Catharine M. Rives Michael L. Metzker Donna M. Muzny Graham Scott David Steffen David A. Wheeler Kim C. Worley Paul Havlak K. James Durbin Amy Egan Rachel Gill Jennifer Hume Margaret B. Morgan George Miner Cerissa Hamilton Yanmei Huang Lenée Waldron Daniel Verduzco Kerstin P. Clerc-Blankenburg Inna Dubchak Mohamed A.F. Noor Wyatt Anderson Kevin P. White Andrew G. Clark
  • ... [+43 authors] ...,
  • Stephen W. Schaeffer
  • William Gelbart
  • George M. Weinstock
  • Richard A. Gibbs
  • First Published January 3, 2005
Methods

Automated Whole-Genome Multiple Alignment of Rat, Mouse, and Human

  • Michael Brudno
  • Alexander Poliakov
  • Asaf Salamov
  • Gregory M. Cooper
  • Arend Sidow
  • Edward M. Rubin
  • Victor Solovyev
  • Serafim Batzoglou
  • Inna Dubchak
  • First Published April 1, 2004
LETTER

Characterization of Evolutionary Rates and Constraints in Three Mammalian Genomes

  • Gregory M. Cooper
  • Michael Brudno
  • Eric A. Stone
  • Inna Dubchak
  • Serafim Batzoglou
  • Arend Sidow
  • First Published April 1, 2004
REVIEW

Cross-Species Sequence Comparisons: A Review of Methods and Available Resources

  • Kelly A. Frazer
  • Laura Elnitski
  • Deanna M. Church
  • Inna Dubchak
  • Ross C. Hardison
  • First Published January 1, 2003
LETTER

Strategies and Tools for Whole-Genome Alignments

  • Olivier Couronne
  • Alexander Poliakov
  • Nicolas Bray
  • Tigran Ishkhanov
  • Dmitriy Ryaboy
  • Edward Rubin
  • Lior Pachter
  • Inna Dubchak
  • First Published January 1, 2003
METHODS

AVID: A Global Alignment Program

  • Nick Bray
  • Inna Dubchak
  • Lior Pachter
  • First Published December 30, 2002
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