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Method

Analyzing rare mutations in metagenomes assembled using long and accurate reads

  • First Published November 23, 2022
Method

Fast and accurate mapping of long reads to complete genome assemblies with VerityMap

  • First Published November 15, 2022
Method

Automated annotation of human centromeres with HORmon

  • First Published May 11, 2022
Method

Variations in antibody repertoires correlate with vaccine responses

  • First Published March 31, 2022
Method

Targeted single-cell RNA sequencing of transcription factors enhances the identification of cell types and trajectories

  • First Published May 19, 2021
Method

Plasmid detection and assembly in genomic and metagenomic data sets

  • First Published May 2, 2019
Method

Detection and analysis of ancient segmental duplications in mammalian genomes

  • First Published May 7, 2018
Method

metaSPAdes: a new versatile metagenomic assembler

  • First Published March 15, 2017
Corrigendum

Corrigendum: Extensive microRNA-mediated crosstalk between lncRNAs and mRNAs in mouse embryonic stem cells

  • First Published September 1, 2015
Research

The clustering of functionally related genes contributes to CNV-mediated disease

  • First Published April 17, 2015
Research

Extensive microRNA-mediated crosstalk between lncRNAs and mRNAs in mouse embryonic stem cells

  • First Published March 19, 2015
Method

Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform" > Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform

  • First Published April 5, 2013
Research

Natural genetic variation caused by small insertions and deletions in the human genome

  • First Published April 1, 2011
Resource

Breakpoint graphs and ancestral genome reconstructions

  • First Published February 13, 2009
LETTER

Reduced purifying selection prevails over positive selection in human copy number variant evolution

  • First Published August 7, 2008
Methods

Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes

  • First Published April 21, 2008
Methods

Short read fragment assembly of bacterial genomes

  • First Published December 14, 2007
Methods

Whole proteome analysis of post-translational modifications: Applications of mass-spectrometry for proteogenomic annotation

  • First Published August 9, 2007
Forum

The convergence of cytogenetics and rearrangement-based models for ancestral genome reconstruction

  • First Published March 1, 2006
Dog Special/Letters

Hotspots of mutation and breakage in dog and human chromosomes

  • First Published December 8, 2005
Chicken Special/Letters

Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages

  • First Published December 8, 2004
ARTICLE

Reconstructing the Genomic Architecture of Ancestral Mammals: Lessons From Human, Mouse, and Rat Genomes

  • First Published April 1, 2004
LETTER

Genome-Scale Evolution: Reconstructing Gene Orders in the Ancestral Species

  • First Published January 1, 2002
INSIGHT/OUTLOOK

Assembling Puzzles from Preassembled Blocks

  • First Published September 1, 2001
METHODS

Efficiency of Database Search for Identification of Mutated and Modified Proteins via Mass Spectrometry

  • First Published February 1, 2001
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