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Research

Epigenetic characterization of pseudogenes across human tissues

  • Yunzhe Jiang
  • Beatrice Borsari
  • Mark Gerstein
  • First Published April 15, 2026
Research

Loss of multilevel 3D genome organization during breast cancer progression

  • Roberto Rossini
  • Saleh Oshaghi
  • Maxim Nekrasov
  • Aurélie Bellanger
  • Renae Domaschenz
  • Yasmin Dijkwel Mohamed Abdelhalim Rahul Agrawal Marit Ledsaak
  • ... [+4 authors] ...,
  • Philippe Collas
  • Ragnhild Eskeland
  • David Tremethick
  • Jonas Paulsen
  • First Published October 9, 2025
Resource

Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships" > Binding profiles for 961 Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships

  • Michelle Kudron
  • Louis Gevirtzman
  • Alec Victorsen
  • Bridget C. Lear
  • Jiahao Gao
  • Jinrui Xu Swapna Samanta Emily Frink Adri Tran-Pearson Chau Huynh Dionne Vafeados Ann Hammonds William Fisher Martha Wall Greg Wesseling Vanessa Hernandez Zhichun Lin Mary Kasparian Kevin White Ravi Allada Mark Gerstein
  • ... [+16 authors] ...,
  • LaDeana Hillier
  • Susan E. Celniker
  • Valerie Reinke
  • Robert H. Waterston
  • First Published October 22, 2024
Method

Targeted single-cell RNA sequencing of transcription factors enhances the identification of cell types and trajectories

  • Alexandra Pokhilko
  • Adam E. Handel
  • Fabiola Curion
  • Viola Volpato
  • Emma S. Whiteley
  • Sunniva Bøstrand Sarah E. Newey Colin J. Akerman
  • ... [+3 authors] ...,
  • Caleb Webber
  • Michael B. Clark
  • Rory Bowden
  • M. Zameel Cader
  • First Published May 19, 2021
Research

Mus caroli and Mus pahari genomes" > Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

  • David Thybert
  • Maša Roller
  • Fábio C.P. Navarro
  • Ian Fiddes
  • Ian Streeter
  • Christine Feig David Martin-Galvez Mikhail Kolmogorov Václav Janoušek Wasiu Akanni Bronwen Aken Sarah Aldridge Varshith Chakrapani William Chow Laura Clarke Carla Cummins Anthony Doran Matthew Dunn Leo Goodstadt Kerstin Howe Matthew Howell Ambre-Aurore Josselin Robert C. Karn Christina M. Laukaitis Lilue Jingtao Fergal Martin Matthieu Muffato Stefanie Nachtweide Michael A. Quail Cristina Sisu Mario Stanke Klara Stefflova Cock Van Oosterhout Frederic Veyrunes Ben Ward Fengtang Yang Golbahar Yazdanifar Amonida Zadissa David J. Adams Alvis Brazma Mark Gerstein Benedict Paten
  • ... [+37 authors] ...,
  • Son Pham
  • Thomas M. Keane
  • Duncan T. Odom
  • Paul Flicek
  • First Published March 21, 2018
Research

PML protein organizes heterochromatin domains where it regulates histone H3.3 deposition by ATRX/DAXX

  • Erwan Delbarre
  • Kristina Ivanauskiene
  • Jane Spirkoski
  • Akshay Shah
  • Kristin Vekterud
  • Jan Øivind Moskaug
  • ... [+1 authors] ...,
  • Stig Ove Bøe
  • Lee H. Wong
  • Thomas Küntziger
  • Philippe Collas
  • First Published March 24, 2017
Research

Prepatterning of differentiation-driven nuclear lamin A/C-associated chromatin domains by GlcNAcylated histone H2B

  • Torunn Rønningen
  • Akshay Shah
  • Anja R. Oldenburg
  • Kristin Vekterud
  • Erwan Delbarre
  • Jan Øivind Moskaug
  • Philippe Collas
  • First Published September 10, 2015
Corrigendum

Corrigendum: Extensive microRNA-mediated crosstalk between lncRNAs and mRNAs in mouse embryonic stem cells

  • Jennifer Y. Tan
  • Tamara Sirey
  • Frantisek Honti
  • Bryony Graham
  • Allison Piovesan
  • Matthias Merkenschlager
  • Caleb Webber
  • Chris P. Ponting
  • Ana C. Marques
  • First Published September 1, 2015
Research

The clustering of functionally related genes contributes to CNV-mediated disease

  • Tallulah Andrews
  • Frantisek Honti
  • Rolph Pfundt
  • Nicole de Leeuw
  • Jayne Hehir-Kwa
  • Anneke Vulto-van Silfhout
  • Bert de Vries
  • Caleb Webber
  • First Published April 17, 2015
Research

Extensive microRNA-mediated crosstalk between lncRNAs and mRNAs in mouse embryonic stem cells

  • Jennifer Y. Tan
  • Tamara Sirey
  • Frantisek Honti
  • Bryony Graham
  • Allison Piovesan
  • Matthias Merkenschlager
  • Caleb Webber
  • Chris P. Ponting
  • Ana C. Marques
  • First Published March 19, 2015
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