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Research

Epigenetic characterization of pseudogenes across human tissues

Yunzhe Jiang
Beatrice Borsari
Mark Gerstein

First Published April 15, 2026

Resource

Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships" > Binding profiles for 961 Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships

Michelle Kudron
Louis Gevirtzman
Alec Victorsen
Bridget C. Lear
Jiahao Gao
Jinrui Xu Swapna Samanta Emily Frink Adri Tran-Pearson Chau Huynh Dionne Vafeados Ann Hammonds William Fisher Martha Wall Greg Wesseling Vanessa Hernandez Zhichun Lin Mary Kasparian Kevin White Ravi Allada Mark Gerstein
... [+16 authors] ...,
LaDeana Hillier
Susan E. Celniker
Valerie Reinke
Robert H. Waterston

First Published October 22, 2024

Method

Targeted single-cell RNA sequencing of transcription factors enhances the identification of cell types and trajectories

Alexandra Pokhilko
Adam E. Handel
Fabiola Curion
Viola Volpato
Emma S. Whiteley
Sunniva Bøstrand Sarah E. Newey Colin J. Akerman
... [+3 authors] ...,
Caleb Webber
Michael B. Clark
Rory Bowden
M. Zameel Cader

First Published May 19, 2021

Research

Replication timing networks reveal a link between transcription regulatory circuits and replication timing control

Juan Carlos Rivera-Mulia
Sebo Kim
Haitham Gabr
Abhijit Chakraborty
Ferhat Ay
Tamer Kahveci
David M. Gilbert

First Published August 21, 2019

Research

Allele-specific control of replication timing and genome organization during development

Juan Carlos Rivera-Mulia
Andrew Dimond
Daniel Vera
Claudia Trevilla-Garcia
Takayo Sasaki
Jared Zimmerman
... [+1 authors] ...,
Catherine Dupont
Joost Gribnau
Peter Fraser
David M. Gilbert

First Published May 7, 2018

Research

Mus caroli and Mus pahari genomes" > Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

David Thybert
Maša Roller
Fábio C.P. Navarro
Ian Fiddes
Ian Streeter
Christine Feig David Martin-Galvez Mikhail Kolmogorov Václav Janoušek Wasiu Akanni Bronwen Aken Sarah Aldridge Varshith Chakrapani William Chow Laura Clarke Carla Cummins Anthony Doran Matthew Dunn Leo Goodstadt Kerstin Howe Matthew Howell Ambre-Aurore Josselin Robert C. Karn Christina M. Laukaitis Lilue Jingtao Fergal Martin Matthieu Muffato Stefanie Nachtweide Michael A. Quail Cristina Sisu Mario Stanke Klara Stefflova Cock Van Oosterhout Frederic Veyrunes Ben Ward Fengtang Yang Golbahar Yazdanifar Amonida Zadissa David J. Adams Alvis Brazma Mark Gerstein Benedict Paten
... [+37 authors] ...,
Son Pham
Thomas M. Keane
Duncan T. Odom
Paul Flicek

First Published March 21, 2018

Corrigendum

Corrigendum: Extensive microRNA-mediated crosstalk between lncRNAs and mRNAs in mouse embryonic stem cells

Jennifer Y. Tan
Tamara Sirey
Frantisek Honti
Bryony Graham
Allison Piovesan
Matthias Merkenschlager
Caleb Webber
Chris P. Ponting
Ana C. Marques

First Published September 1, 2015

Research

Dynamic changes in replication timing and gene expression during lineage specification of human pluripotent stem cells

Juan Carlos Rivera-Mulia
Quinton Buckley
Takayo Sasaki
Jared Zimmerman
Ruth A. Didier
Kristopher Nazor Jeanne F. Loring Zheng Lian Sherman Weissman Allan J. Robins Thomas C. Schulz Laura Menendez Michael J. Kulik
... [+8 authors] ...,
Stephen Dalton
Haitham Gabr
Tamer Kahveci
David M. Gilbert

First Published June 8, 2015

Research

Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program

Vishnu Dileep
Ferhat Ay
Jiao Sima
Daniel L. Vera
William S. Noble
David M. Gilbert

First Published May 20, 2015

Research

The clustering of functionally related genes contributes to CNV-mediated disease

Tallulah Andrews
Frantisek Honti
Rolph Pfundt
Nicole de Leeuw
Jayne Hehir-Kwa
Anneke Vulto-van Silfhout
Bert de Vries
Caleb Webber

First Published April 17, 2015

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Your search for returned 42 results

Research

Epigenetic characterization of pseudogenes across human tissues

Resource

Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships" > Binding profiles for 961 Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships

Method

Targeted single-cell RNA sequencing of transcription factors enhances the identification of cell types and trajectories

Research

Replication timing networks reveal a link between transcription regulatory circuits and replication timing control

Research

Allele-specific control of replication timing and genome organization during development

Research

Mus caroli and Mus pahari genomes" > Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

Corrigendum

Corrigendum: Extensive microRNA-mediated crosstalk between lncRNAs and mRNAs in mouse embryonic stem cells

Research

Dynamic changes in replication timing and gene expression during lineage specification of human pluripotent stem cells

Research

Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program

Research

The clustering of functionally related genes contributes to CNV-mediated disease

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