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Rearrangements of viral and human genomes at human papillomavirus integration events and their allele-specific impacts on cancer genome regulation

  • First Published December 5, 2024

High-resolution structural genomics reveals new therapeutic vulnerabilities in glioblastoma

  • First Published June 27, 2019

TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data

  • First Published July 24, 2014

Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm

  • First Published June 26, 2013

Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods

  • First Published June 26, 2013

Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer

  • First Published May 25, 2012

Extensive relationship between antisense transcription and alternative splicing in the human genome

  • First Published June 30, 2011

Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence" > Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence

  • First Published December 22, 2010

Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver

  • First Published June 15, 2010

The completion of the Mammalian Gene Collection (MGC)

  • First Published September 18, 2009

Next-generation tag sequencing for cancer gene expression profiling

  • First Published June 18, 2009

Circos: An information aesthetic for comparative genomics

  • First Published June 18, 2009

C. elegans" > Massively parallel sequencing of the polyadenylated transcriptome of C. elegans

  • First Published January 30, 2009

In-depth characterization of the microRNA transcriptome in a leukemia progression model

  • First Published October 10, 2008

Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding

  • First Published September 11, 2008

Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells

  • First Published February 19, 2008

Caenorhabditis elegans operons" > Identification and analysis of internal promoters in Caenorhabditis elegans operons

  • First Published August 21, 2007

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

  • First Published June 13, 2007

Large-scale production of SAGE libraries from microdissected tissues, flow-sorted cells, and cell lines

  • First Published November 29, 2006

Physical map-assisted whole-genome shotgun sequence assemblies

  • First Published June 1, 2006

Xenopus laevis and Xenopus tropicalis reveals post-tetraploidization transcriptome remodeling" > Sequencing and analysis of 10,967 full-length cDNA clones from Xenopus laevis and Xenopus tropicalis reveals post-tetraploidization transcriptome remodeling

  • First Published May 3, 2006

Identification by full-coverage array CGH of human DNA copy number increases relative to chimpanzee and gorilla

  • First Published December 19, 2005

Simple, robust methods for high-throughput nanoliter-scale DNA sequencing

  • First Published September 16, 2005

C. elegans daf-2 mutants using serial analysis of gene expression" > Analysis of long-lived C. elegans daf-2 mutants using serial analysis of gene expression

  • First Published April 18, 2005

Systematic Recovery and Analysis of Full-ORF Human cDNA Clones

  • First Published October 15, 2004

Development and Application of a Salmonid EST Database and cDNA Microarray: Data Mining and Interspecific Hybridization Characteristics

  • First Published February 12, 2004

Internet Contig Explorer (iCE)—A Tool for Visualizing Clone Fingerprint Maps

  • First Published June 1, 2003

Assessment of SAGE in Transcript Identification

  • First Published May 12, 2003

Software for Automated Analysis of DNA Fingerprinting Gels

  • First Published May 1, 2003

Cryptococcus neoformans " > Physical Maps for Genome Analysis of Serotype A and D Strains of the Fungal Pathogen Cryptococcus neoformans

  • First Published August 21, 2002

An Oligonucleotide Fingerprint Normalized and Expressed Sequence Tag Characterized Zebrafish cDNA Library

  • First Published August 16, 2001

Caenorhabditis elegans " > Changes in Gene Expression Associated with Developmental Arrest and Longevity in Caenorhabditis elegans

  • First Published July 12, 2001

Theories and Applications for Sequencing Randomly Selected Clones

  • First Published January 18, 2001

Identifying Potential Tumor Markers and Antigens by Database Mining and Rapid Expression Screening

  • First Published September 1, 2000

Bpa/Str Region in Mouse and Man" > Comparative Genome Sequence Analysis of the Bpa/Str Region in Mouse and Man

  • First Published June 1, 2000

CMT2D Locus: Refined Genetic Position and Construction of a Bacterial Clone-Based Physical Map" > The CMT2D Locus: Refined Genetic Position and Construction of a Bacterial Clone-Based Physical Map

  • First Published June 1, 1999

High Throughput Fingerprint Analysis of Large-Insert Clones

  • First Published November 1, 1997
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