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Method

De novo detection of somatic variants in high-quality long-read single-cell RNA sequencing data

Arthur Dondi
Nico Borgsmüller
Pedro F. Ferreira
Brian J. Haas
Francis Jacob
Viola Heinzelmann-Schwarz
Niko Beerenwinkel

First Published March 19, 2025

Method

Accurate fusion transcript identification from long- and short-read isoform sequencing at bulk or single-cell resolution

Qian Qin
Victoria Popic
Kirsty Wienand
Houlin Yu
Emily White
Akanksha Khorgade Asa Shin Christophe Georgescu Catarina D. Campbell Arthur Dondi
... [+5 authors] ...,
Niko Beerenwinkel
Francisca Vazquez
Aziz M. Al'Khafaji
Brian J. Haas

First Published March 14, 2025

Research

Single-cell RNA-seq reveals changes in cell cycle and differentiation programs upon aging of hematopoietic stem cells

Monika S. Kowalczyk
Itay Tirosh
Dirk Heckl
Tata Nageswara Rao
Atray Dixit
Brian J. Haas
... [+1 authors] ...,
Rebekka K. Schneider
Amy J. Wagers
Benjamin L. Ebert
Aviv Regev

First Published October 1, 2015

Resource

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

Brian J. Haas
Dirk Gevers
Ashlee M. Earl
Mike Feldgarden
Doyle V. Ward
Georgia Giannoukos Dawn Ciulla Diana Tabbaa Sarah K. Highlander Erica Sodergren Barbara Methé
... [+6 authors] ...,
Todd Z. DeSantis
Joseph F. Petrosino
Rob Knight
Bruce W. Birren

First Published January 6, 2011

LETTER

Brassica oleracea and its application to gene discovery and annotation in Arabidopsis" > Whole genome shotgun sequencing of Brassica oleracea and its application to gene discovery and annotation in Arabidopsis

Mulu Ayele
Brian J. Haas
Nikhil Kumar
Hank Wu
Yongli Xiao
Susan Van Aken
... [+1 authors] ...,
Teresa R. Utterback
Jennifer R. Wortman
Owen R. White
Christopher D. Town

First Published April 1, 2005

Methods

Computational Discovery of Internal Micro-Exons

Natalia Volfovsky
Brian J. Haas
Steven L. Salzberg

First Published June 1, 2003