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Method

Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes

George Armstrong
Kalen Cantrell
Shi Huang
Daniel McDonald
Niina Haiminen
Anna Paola Carrieri Qiyun Zhu Antonio Gonzalez Imran McGrath Kristen L. Beck Daniel Hakim Aki S. Havulinna Guillaume Méric Teemu Niiranen Leo Lahti Veikko Salomaa Mohit Jain Michael Inouye Austin D. Swafford
... [+14 authors] ...,
Ho-Cheol Kim
Laxmi Parida
Yoshiki Vázquez-Baeza
Rob Knight

First Published September 3, 2021

Corrigendum

Corrigendum: Tempo and mode of regulatory evolution in Drosophila

Joseph D. Coolon
C. Joel McManus
Kraig R. Stevenson
Brenton R. Graveley
Patricia J. Wittkopp

First Published November 1, 2018

Research

Discovery of a new repeat family in the Callithrix jacchus genome

Miriam K. Konkel
Brygg Ullmer
Erika L. Arceneaux
Sreeja Sanampudi
Sarah A. Brantley
Robert Hubley
Arian F.A. Smit
Mark A. Batzer

First Published February 25, 2016

Research

Extensive cross-regulation of post-transcriptional regulatory networks in Drosophila

Marcus H. Stoiber
Sara Olson
Gemma E. May
Michael O. Duff
Jan Manent
Robert Obar K.G. Guruharsha Peter J. Bickel
... [+3 authors] ...,
Spyros Artavanis-Tsakonas
James B. Brown
Brenton R. Graveley
Susan E. Celniker

First Published August 20, 2015

Resource

Regulation of alternative splicing in Drosophila by 56 RNA binding proteins

Angela N. Brooks
Michael O. Duff
Gemma May
Li Yang
Mohan Bolisetty
Jane Landolin Ken Wan Jeremy Sandler
... [+3 authors] ...,
Benjamin W. Booth
Susan E. Celniker
Brenton R. Graveley
Steven E. Brenner

First Published August 20, 2015

Resource

Comparative validation of the D. melanogaster modENCODE transcriptome annotation

Zhen-Xia Chen
David Sturgill
Jiaxin Qu
Huaiyang Jiang
Soo Park
Nathan Boley Ana Maria Suzuki Anthony R. Fletcher David C. Plachetzki Peter C. FitzGerald Carlo G. Artieri Joel Atallah Olga Barmina James B. Brown Kerstin P. Blankenburg Emily Clough Abhijit Dasgupta Sai Gubbala Yi Han Joy C. Jayaseelan Divya Kalra Yoo-Ah Kim Christie L. Kovar Sandra L. Lee Mingmei Li James D. Malley John H. Malone Tittu Mathew Nicolas R. Mattiuzzo Mala Munidasa Donna M. Muzny Fiona Ongeri Lora Perales Teresa M. Przytycka Ling-Ling Pu Garrett Robinson Rebecca L. Thornton Nehad Saada Steven E. Scherer Harold E. Smith Charles Vinson Crystal B. Warner Kim C. Worley Yuan-Qing Wu Xiaoyan Zou Peter Cherbas Manolis Kellis Michael B. Eisen Fabio Piano Karin Kionte David H. Fitch Paul W. Sternberg Asher D. Cutter Michael O. Duff Roger A. Hoskins Brenton R. Graveley Richard A. Gibbs Peter J. Bickel Artyom Kopp
... [+54 authors] ...,
Piero Carninci
Susan E. Celniker
Brian Oliver
Stephen Richards

First Published July 1, 2014

Research

Tempo and mode of regulatory evolution in Drosophila

Joseph D. Coolon
C. Joel McManus
Kraig R. Stevenson
Brenton R. Graveley
Patricia J. Wittkopp

First Published February 24, 2014

Research

Evolution of splicing regulatory networks in Drosophila

C. Joel McManus
Joseph D. Coolon
Jodi Eipper-Mains
Patricia J. Wittkopp
Brenton R. Graveley

First Published February 10, 2014

Method

Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations

David J. Witherspoon
Yuhua Zhang
Jinchuan Xing
W. Scott Watkins
Hongseok Ha
Mark A. Batzer
Lynn B. Jorde

First Published April 18, 2013

Perspective

Reading TE leaves: New approaches to the identification of transposable element insertions

David A. Ray
Mark A. Batzer

First Published June 1, 2011

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