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Research

Closing the gaps, and improving somatic structural variant analysis and benchmarking using CHM13-T2T

Luis F. Paulin
Jeremy Fan
Kieran O'Neill
Erin Pleasance
Vanessa L. Porter
Steven J.M. Jones
Fritz J. Sedlazeck

First Published March 17, 2025

Research

Rearrangements of viral and human genomes at human papillomavirus integration events and their allele-specific impacts on cancer genome regulation

Vanessa L. Porter
Michelle Ng
Kieran O'Neill
Signe MacLennan
Richard D. Corbett
Luka Culibrk Zeid Hamadeh Marissa Iden Rachel Schmidt Shirng-Wern Tsaih Carolyn Nakisige Martin Origa Jackson Orem Glenn Chang Jeremy Fan Ka Ming Nip Vahid Akbari Simon K. Chan James Hopkins Richard A. Moore Eric Chuah Karen L. Mungall Andrew J. Mungall
... [+18 authors] ...,
Inanc Birol
Steven J.M. Jones
Janet S. Rader
Marco A. Marra

First Published December 5, 2024

Resource

A chromosome-level assembly of the Atlantic herring genome—detection of a supergene and other signals of selection

Mats E. Pettersson
Christina M. Rochus
Fan Han
Junfeng Chen
Jason Hill
Ola Wallerman Guangyi Fan Xiaoning Hong Qiwu Xu He Zhang Shanshan Liu Xin Liu Leanne Haggerty Toby Hunt Fergal J. Martin
... [+10 authors] ...,
Paul Flicek
Ignas Bunikis
Arild Folkvord
Leif Andersson

First Published October 24, 2019

Corrigendum

Corrigendum: Tempo and mode of regulatory evolution in Drosophila

Joseph D. Coolon
C. Joel McManus
Kraig R. Stevenson
Brenton R. Graveley
Patricia J. Wittkopp

First Published November 1, 2018

Research

Extensive cross-regulation of post-transcriptional regulatory networks in Drosophila

Marcus H. Stoiber
Sara Olson
Gemma E. May
Michael O. Duff
Jan Manent
Robert Obar K.G. Guruharsha Peter J. Bickel
... [+3 authors] ...,
Spyros Artavanis-Tsakonas
James B. Brown
Brenton R. Graveley
Susan E. Celniker

First Published August 20, 2015

Resource

Regulation of alternative splicing in Drosophila by 56 RNA binding proteins

Angela N. Brooks
Michael O. Duff
Gemma May
Li Yang
Mohan Bolisetty
Jane Landolin Ken Wan Jeremy Sandler
... [+3 authors] ...,
Benjamin W. Booth
Susan E. Celniker
Brenton R. Graveley
Steven E. Brenner

First Published August 20, 2015

Resource

Comparative validation of the D. melanogaster modENCODE transcriptome annotation

Zhen-Xia Chen
David Sturgill
Jiaxin Qu
Huaiyang Jiang
Soo Park
Nathan Boley Ana Maria Suzuki Anthony R. Fletcher David C. Plachetzki Peter C. FitzGerald Carlo G. Artieri Joel Atallah Olga Barmina James B. Brown Kerstin P. Blankenburg Emily Clough Abhijit Dasgupta Sai Gubbala Yi Han Joy C. Jayaseelan Divya Kalra Yoo-Ah Kim Christie L. Kovar Sandra L. Lee Mingmei Li James D. Malley John H. Malone Tittu Mathew Nicolas R. Mattiuzzo Mala Munidasa Donna M. Muzny Fiona Ongeri Lora Perales Teresa M. Przytycka Ling-Ling Pu Garrett Robinson Rebecca L. Thornton Nehad Saada Steven E. Scherer Harold E. Smith Charles Vinson Crystal B. Warner Kim C. Worley Yuan-Qing Wu Xiaoyan Zou Peter Cherbas Manolis Kellis Michael B. Eisen Fabio Piano Karin Kionte David H. Fitch Paul W. Sternberg Asher D. Cutter Michael O. Duff Roger A. Hoskins Brenton R. Graveley Richard A. Gibbs Peter J. Bickel Artyom Kopp
... [+54 authors] ...,
Piero Carninci
Susan E. Celniker
Brian Oliver
Stephen Richards

First Published July 1, 2014

Research

Tempo and mode of regulatory evolution in Drosophila

Joseph D. Coolon
C. Joel McManus
Kraig R. Stevenson
Brenton R. Graveley
Patricia J. Wittkopp

First Published February 24, 2014

Research

Evolution of splicing regulatory networks in Drosophila

C. Joel McManus
Joseph D. Coolon
Jodi Eipper-Mains
Patricia J. Wittkopp
Brenton R. Graveley

First Published February 10, 2014

Research

Genome-wide analysis of promoter architecture in Drosophila melanogaster

Roger A. Hoskins
Jane M. Landolin
James B. Brown
Jeremy E. Sandler
Hazuki Takahashi
Timo Lassmann Charles Yu Benjamin W. Booth Dayu Zhang Kenneth H. Wan Li Yang Nathan Boley Justen Andrews Thomas C. Kaufman Brenton R. Graveley
... [+10 authors] ...,
Peter J. Bickel
Piero Carninci
Joseph W. Carlson
Susan E. Celniker

First Published December 22, 2010

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