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Perspective

The Topological Regulatory Logic of noncoding RNA–mediated gene expression

  • Thomas R. Gingeras
  • First Published June 17, 2026
Resource

A limited set of transcriptional programs define major cell types

  • Alessandra Breschi
  • Manuel Muñoz-Aguirre
  • Valentin Wucher
  • Carrie A. Davis
  • Diego Garrido-Martín
  • Sarah Djebali Jesse Gillis Dmitri D. Pervouchine Anna Vlasova Alexander Dobin Chris Zaleski Jorg Drenkow Cassidy Danyko Alexandra Scavelli
  • ... [+9 authors] ...,
  • Ferran Reverter
  • Michael P. Snyder
  • Thomas R. Gingeras
  • Roderic Guigó
  • First Published July 29, 2020
Resource

Dynamics of microRNA expression during mouse prenatal development

  • Sorena Rahmanian
  • Rabi Murad
  • Alessandra Breschi
  • Weihua Zeng
  • Mark Mackiewicz
  • Brian Williams Carrie A. Davis Brian Roberts Sarah Meadows Dianna Moore Diane Trout Chris Zaleski Alex Dobin Lei-Hoon Sei Jorg Drenkow Alex Scavelli Thomas R. Gingeras
  • ... [+12 authors] ...,
  • Barbara J. Wold
  • Richard M. Myers
  • Roderic Guigó
  • Ali Mortazavi
  • First Published October 23, 2019
Research

Alu elements suggests cell-type–specific enhancer function" > Genome-wide analysis of polymerase III–transcribed Alu elements suggests cell-type–specific enhancer function

  • Xiao-Ou Zhang
  • Thomas R. Gingeras
  • Zhiping Weng
  • First Published August 14, 2019
Corrigendum

Drosophila" > Corrigendum: Tempo and mode of regulatory evolution in Drosophila

  • Joseph D. Coolon
  • C. Joel McManus
  • Kraig R. Stevenson
  • Brenton R. Graveley
  • Patricia J. Wittkopp
  • First Published November 1, 2018
Corrigendum

Corrigendum: Extensive microRNA-mediated crosstalk between lncRNAs and mRNAs in mouse embryonic stem cells

  • Jennifer Y. Tan
  • Tamara Sirey
  • Frantisek Honti
  • Bryony Graham
  • Allison Piovesan
  • Matthias Merkenschlager
  • Caleb Webber
  • Chris P. Ponting
  • Ana C. Marques
  • First Published September 1, 2015
Resource

Drosophila by 56 RNA binding proteins" > Regulation of alternative splicing in Drosophila by 56 RNA binding proteins

  • Angela N. Brooks
  • Michael O. Duff
  • Gemma May
  • Li Yang
  • Mohan Bolisetty
  • Jane Landolin Ken Wan Jeremy Sandler
  • ... [+3 authors] ...,
  • Benjamin W. Booth
  • Susan E. Celniker
  • Brenton R. Graveley
  • Steven E. Brenner
  • First Published August 20, 2015
Research

Drosophila" > Extensive cross-regulation of post-transcriptional regulatory networks in Drosophila

  • Marcus H. Stoiber
  • Sara Olson
  • Gemma E. May
  • Michael O. Duff
  • Jan Manent
  • Robert Obar K.G. Guruharsha Peter J. Bickel
  • ... [+3 authors] ...,
  • Spyros Artavanis-Tsakonas
  • James B. Brown
  • Brenton R. Graveley
  • Susan E. Celniker
  • First Published August 20, 2015
Research

Extensive microRNA-mediated crosstalk between lncRNAs and mRNAs in mouse embryonic stem cells

  • Jennifer Y. Tan
  • Tamara Sirey
  • Frantisek Honti
  • Bryony Graham
  • Allison Piovesan
  • Matthias Merkenschlager
  • Caleb Webber
  • Chris P. Ponting
  • Ana C. Marques
  • First Published March 19, 2015
Research

RBFOX and PTBP1 proteins regulate the alternative splicing of micro-exons in human brain transcripts

  • Yang I. Li
  • Luis Sanchez-Pulido
  • Wilfried Haerty
  • Chris P. Ponting
  • First Published December 18, 2014
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