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Your search for returned 45 results

Method

Simultaneous assessment of human genome and methylome data in a single experiment using limited deamination of methylated cytosine

Bo Yan
Duan Wang
Laurence Ettwiller

First Published June 10, 2024

Method

Methyl-SNP-seq reveals dual readouts of methylome and variome at molecule resolution while enabling target enrichment

Bo Yan
Duan Wang
Romualdas Vaisvila
Zhiyi Sun
Laurence Ettwiller

First Published November 4, 2022

Method

Comprehensive determination of transcription start sites derived from all RNA polymerases using ReCappable-seq

Bo Yan
George Tzertzinis
Ira Schildkraut
Laurence Ettwiller

First Published November 23, 2021

Method

Enzymatic methyl sequencing detects DNA methylation at single-base resolution from picograms of DNA

Romualdas Vaisvila
V.K. Chaithanya Ponnaluri
Zhiyi Sun
Bradley W. Langhorst
Lana Saleh
Shengxi Guan Nan Dai Matthew A. Campbell Brittany S. Sexton Katherine Marks Mala Samaranayake James C. Samuelson Heidi E. Church Esta Tamanaha Ivan R. Corrêa Sriharsa Pradhan
... [+11 authors] ...,
Eileen T. Dimalanta
Thomas C. Evans
Louise Williams
Theodore B. Davis

First Published June 17, 2021

Method

Nondestructive enzymatic deamination enables single-molecule long-read amplicon sequencing for the determination of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution

Zhiyi Sun
Romualdas Vaisvila
Laura-Madison Hussong
Bo Yan
Chloé Baum
Lana Saleh Mala Samaranayake Shengxi Guan Nan Dai Ivan R. Corrêa
... [+5 authors] ...,
Sriharsa Pradhan
Theodore B. Davis
Thomas C. Evans
Laurence M. Ettwiller

First Published January 19, 2021

Research

Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration

Weisheng Wu
Yong Cheng
Cheryl A. Keller
Jason Ernst
Swathi Ashok Kumar
Tejaswini Mishra Christapher Morrissey Christine M. Dorman Kuan-Bei Chen Daniela Drautz Belinda Giardine Yoichiro Shibata Lingyun Song Max Pimkin Gregory E. Crawford Terrence S. Furey Manolis Kellis Webb Miller James Taylor Stephan C. Schuster Yu Zhang
... [+16 authors] ...,
Francesca Chiaromonte
Gerd A. Blobel
Mitchell J. Weiss
Ross C. Hardison

First Published July 27, 2011

Method

Genome-wide identification of conserved regulatory function in diverged sequences

Leila Taher
David M. McGaughey
Samantha Maragh
Ivy Aneas
Seneca L. Bessling
Webb Miller
Marcelo A. Nobrega
Andrew S. McCallion
Ivan Ovcharenko

First Published May 31, 2011

Article

Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression

Yong Cheng
Weisheng Wu
Swathi Ashok Kumar
Duonan Yu
Wulan Deng
Tamara Tripic David C. King Kuan-Bei Chen Ying Zhang Daniela Drautz Belinda Giardine Stephan C. Schuster Webb Miller Francesca Chiaromonte
... [+9 authors] ...,
Yu Zhang
Gerd A. Blobel
Mitchell J. Weiss
Ross C. Hardison

First Published November 3, 2009

LETTER

Thylacinus cynocephalus)" > The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus)

Webb Miller
Daniela I. Drautz
Jan E. Janecka
Arthur M. Lesk
Aakrosh Ratan
Lynn P. Tomsho Mike Packard Yeting Zhang Lindsay R. McClellan Ji Qi Fangqing Zhao M. Thomas P. Gilbert Love Dalén Juan Luis Arsuaga Per G.P. Ericson Daniel H. Huson
... [+11 authors] ...,
Kristofer M. Helgen
William J. Murphy
Anders Götherström
Stephan C. Schuster

First Published January 12, 2009

LETTER

Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif

Yong Cheng
David C. King
Louis C. Dore
Xinmin Zhang
Yuepin Zhou
Ying Zhang Christine Dorman Demesew Abebe Swathi A. Kumar Francesca Chiaromonte
... [+5 authors] ...,
Webb Miller
Roland D. Green
Mitchell J. Weiss
Ross C. Hardison

First Published September 25, 2008

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