Filter results by:
Author
Publication date
Article type

Filter by Article type

Your search for returned 27 results

Save search
Order by:
Show per page
Method

Simultaneous assessment of human genome and methylome data in a single experiment using limited deamination of methylated cytosine

  • Bo Yan
  • Duan Wang
  • Laurence Ettwiller
  • First Published June 10, 2024
Method

Methyl-SNP-seq reveals dual readouts of methylome and variome at molecule resolution while enabling target enrichment

  • Bo Yan
  • Duan Wang
  • Romualdas Vaisvila
  • Zhiyi Sun
  • Laurence Ettwiller
  • First Published November 4, 2022
Method

Comprehensive determination of transcription start sites derived from all RNA polymerases using ReCappable-seq

  • Bo Yan
  • George Tzertzinis
  • Ira Schildkraut
  • Laurence Ettwiller
  • First Published November 23, 2021
Method

Enzymatic methyl sequencing detects DNA methylation at single-base resolution from picograms of DNA

  • Romualdas Vaisvila
  • V.K. Chaithanya Ponnaluri
  • Zhiyi Sun
  • Bradley W. Langhorst
  • Lana Saleh
  • Shengxi Guan Nan Dai Matthew A. Campbell Brittany S. Sexton Katherine Marks Mala Samaranayake James C. Samuelson Heidi E. Church Esta Tamanaha Ivan R. Corrêa Sriharsa Pradhan
  • ... [+11 authors] ...,
  • Eileen T. Dimalanta
  • Thomas C. Evans
  • Louise Williams
  • Theodore B. Davis
  • First Published June 17, 2021
Method

Nondestructive enzymatic deamination enables single-molecule long-read amplicon sequencing for the determination of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution

  • Zhiyi Sun
  • Romualdas Vaisvila
  • Laura-Madison Hussong
  • Bo Yan
  • Chloé Baum
  • Lana Saleh Mala Samaranayake Shengxi Guan Nan Dai Ivan R. Corrêa
  • ... [+5 authors] ...,
  • Sriharsa Pradhan
  • Theodore B. Davis
  • Thomas C. Evans
  • Laurence M. Ettwiller
  • First Published January 19, 2021
Method

Read clouds uncover variation in complex regions of the human genome

  • Alex Bishara
  • Yuling Liu
  • Ziming Weng
  • Dorna Kashef-Haghighi
  • Daniel E. Newburger
  • Robert West
  • Arend Sidow
  • Serafim Batzoglou
  • First Published August 18, 2015
Method

Parente2: a fast and accurate method for detecting identity by descent

  • Jesse M. Rodriguez
  • Sivan Bercovici
  • Lin Huang
  • Roy Frostig
  • Serafim Batzoglou
  • First Published October 1, 2014
Research

Genome evolution during progression to breast cancer

  • Daniel E. Newburger
  • Dorna Kashef-Haghighi
  • Ziming Weng
  • Raheleh Salari
  • Robert T. Sweeney
  • Alayne L. Brunner Shirley X. Zhu Xiangqian Guo Sushama Varma
  • ... [+4 authors] ...,
  • Megan L. Troxell
  • Robert B. West
  • Serafim Batzoglou
  • Arend Sidow
  • First Published April 8, 2013
Method

Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements

  • Anshul Kundaje
  • Sofia Kyriazopoulou-Panagiotopoulou
  • Max Libbrecht
  • Cheryl L. Smith
  • Debasish Raha
  • Elliott E. Winters
  • ... [+1 authors] ...,
  • Steven M. Johnson
  • Michael Snyder
  • Serafim Batzoglou
  • Arend Sidow
  • First Published September 5, 2012
Resource

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

  • Stephen G. Landt
  • Georgi K. Marinov
  • Anshul Kundaje
  • Pouya Kheradpour
  • Florencia Pauli
  • Serafim Batzoglou Bradley E. Bernstein Peter Bickel James B. Brown Philip Cayting Yiwen Chen Gilberto DeSalvo Charles Epstein Katherine I. Fisher-Aylor Ghia Euskirchen Mark Gerstein Jason Gertz Alexander J. Hartemink Michael M. Hoffman Vishwanath R. Iyer Youngsook L. Jung Subhradip Karmakar Manolis Kellis Peter V. Kharchenko Qunhua Li Tao Liu X. Shirley Liu Lijia Ma Aleksandar Milosavljevic Richard M. Myers Peter J. Park Michael J. Pazin Marc D. Perry Debasish Raha Timothy E. Reddy Joel Rozowsky Noam Shoresh Arend Sidow Matthew Slattery John A. Stamatoyannopoulos Michael Y. Tolstorukov Kevin P. White Simon Xi
  • ... [+38 authors] ...,
  • Peggy J. Farnham
  • Jason D. Lieb
  • Barbara J. Wold
  • Michael Snyder
  • First Published September 5, 2012
Show per page