Search | Genome Research

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Research

Single-cell template strand sequencing reveals culture-induced chromosomal instability in a gibbon cell line

Alessia Daponte
Gerardina Chirico
Annalisa Paparella
Annalaura Montanari
Caterina Manzari
Martina Macino Oliver Dionisi Dyck Francesco De Leonardis Flavia Angela Maria Maggiolini Alberto L'Abbate Francesco Montinaro Sandra Louzada
... [+7 authors] ...,
Mario Ventura
Ashley D. Sanders
Francesca Antonacci
Claudia Rita Catacchio

First Published May 4, 2026

Method

Simultaneous assessment of human genome and methylome data in a single experiment using limited deamination of methylated cytosine

Bo Yan
Duan Wang
Laurence Ettwiller

First Published June 10, 2024

Method

Methyl-SNP-seq reveals dual readouts of methylome and variome at molecule resolution while enabling target enrichment

Bo Yan
Duan Wang
Romualdas Vaisvila
Zhiyi Sun
Laurence Ettwiller

First Published November 4, 2022

Resource

A high-resolution map of small-scale inversions in the gibbon genome

Ludovica Mercuri
Donato Palmisano
Alberto L'Abbate
Pietro D'Addabbo
Francesco Montinaro
Claudia Rita Catacchio Patrick Hasenfeld Mario Ventura
... [+3 authors] ...,
Jan O. Korbel
Ashley D. Sanders
Flavia Angela Maria Maggiolini
Francesca Antonacci

First Published September 30, 2022

Method

Comprehensive determination of transcription start sites derived from all RNA polymerases using ReCappable-seq

Bo Yan
George Tzertzinis
Ira Schildkraut
Laurence Ettwiller

First Published November 23, 2021

Method

Enzymatic methyl sequencing detects DNA methylation at single-base resolution from picograms of DNA

Romualdas Vaisvila
V.K. Chaithanya Ponnaluri
Zhiyi Sun
Bradley W. Langhorst
Lana Saleh
Shengxi Guan Nan Dai Matthew A. Campbell Brittany S. Sexton Katherine Marks Mala Samaranayake James C. Samuelson Heidi E. Church Esta Tamanaha Ivan R. Corrêa Sriharsa Pradhan
... [+11 authors] ...,
Eileen T. Dimalanta
Thomas C. Evans
Louise Williams
Theodore B. Davis

First Published June 17, 2021

Method

Nondestructive enzymatic deamination enables single-molecule long-read amplicon sequencing for the determination of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution

Zhiyi Sun
Romualdas Vaisvila
Laura-Madison Hussong
Bo Yan
Chloé Baum
Lana Saleh Mala Samaranayake Shengxi Guan Nan Dai Ivan R. Corrêa
... [+5 authors] ...,
Sriharsa Pradhan
Theodore B. Davis
Thomas C. Evans
Laurence M. Ettwiller

First Published January 19, 2021

Resource

Single-cell strand sequencing of a macaque genome reveals multiple nested inversions and breakpoint reuse during primate evolution

Flavia Angela Maria Maggiolini
Ashley D. Sanders
Colin James Shew
Arvis Sulovari
Yafei Mao
Marta Puig Claudia Rita Catacchio Maria Dellino Donato Palmisano Ludovica Mercuri Miriana Bitonto David Porubský Mario Cáceres Evan E. Eichler
... [+9 authors] ...,
Mario Ventura
Megan Y. Dennis
Jan O. Korbel
Francesca Antonacci

First Published October 22, 2020

Resource

Inversion variants in human and primate genomes

Claudia Rita Catacchio
Flavia Angela Maria Maggiolini
Pietro D'Addabbo
Miriana Bitonto
Oronzo Capozzi
Martina Lepore Signorile Mattia Miroballo
... [+2 authors] ...,
Nicoletta Archidiacono
Evan E. Eichler
Mario Ventura
Francesca Antonacci

First Published May 18, 2018

Corrigendum

Corrigendum: The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2

Mario Ventura
Claudia R. Catacchio
Saba Sajjadian
Laura Vives
Peter H. Sudmant
Tomas Marques-Bonet
Tina A. Graves
Richard K. Wilson
Evan E. Eichler

First Published September 1, 2017

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