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Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes

Guanjue Xiang
Xi He
Belinda M. Giardine
Kathryn J. Isaac
Dylan J. Taylor
Rajiv C. McCoy Camden Jansen Cheryl A. Keller Alexander Q. Wixom April Cockburn Amber Miller Qian Qi Yanghua He Yichao Li Jens Lichtenberg Elisabeth F. Heuston Stacie M. Anderson Jing Luan Marit W. Vermunt Feng Yue Michael E.G. Sauria Michael C. Schatz James Taylor Berthold Göttgens Jim R. Hughes Douglas R. Higgs Mitchell J. Weiss Yong Cheng Gerd A. Blobel David M. Bodine
... [+25 authors] ...,
Yu Zhang
Qunhua Li
Shaun Mahony
Ross C. Hardison

First Published July 1, 2024

Domain-adaptive neural networks improve cross-species prediction of transcription factor binding

Kelly Cochran
Divyanshi Srivastava
Avanti Shrikumar
Akshay Balsubramani
Ross C. Hardison
Anshul Kundaje
Shaun Mahony

First Published January 18, 2022

Panoramic transcriptome analysis and functional screening of long noncoding RNAs in mouse spermatogenesis

Kai Li
Jiayue Xu
Yanyun Luo
Dingfeng Zou
Ruiqin Han
Shunshun Zhong Qing Zhao Xinyu Mang Mengzhen Li Yanmin Si Yan Lu Pengyu Li Cheng Jin Zhipeng Wang Fang Wang Shiying Miao Bo Wen
... [+12 authors] ...,
Linfang Wang
Yanni Ma
Jia Yu
Wei Song

First Published December 16, 2020

An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis

Guanjue Xiang
Cheryl A. Keller
Elisabeth Heuston
Belinda M. Giardine
Lin An
Alexander Q. Wixom Amber Miller April Cockburn Michael E.G. Sauria Kathryn Weaver Jens Lichtenberg Berthold Göttgens Qunhua Li David Bodine Shaun Mahony James Taylor Gerd A. Blobel Mitchell J. Weiss Yong Cheng Feng Yue
... [+15 authors] ...,
Jim Hughes
Douglas R. Higgs
Yu Zhang
Ross C. Hardison

First Published March 4, 2020

PepQuery enables fast, accurate, and convenient proteomic validation of novel genomic alterations

Bo Wen
Xiaojing Wang
Bing Zhang

First Published January 4, 2019

The nuclear matrix protein HNRNPU maintains 3D genome architecture globally in mouse hepatocytes

Hui Fan
Pin Lv
Xiangru Huo
Jicheng Wu
Qianfeng Wang
Lu Cheng Yun Liu Qi-Qun Tang Ling Zhang
... [+4 authors] ...,
Feng Zhang
Xiaoqi Zheng
Hao Wu
Bo Wen

First Published December 22, 2017

HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient

Tao Yang
Feipeng Zhang
Galip Gürkan Yardımcı
Fan Song
Ross C. Hardison
William Stafford Noble
Feng Yue
Qunhua Li

First Published August 30, 2017

Genome accessibility is widely preserved and locally modulated during mitosis

Chris C.-S. Hsiung
Christapher S. Morrissey
Maheshi Udugama
Christopher L. Frank
Cheryl A. Keller
Songjoon Baek Belinda Giardine
... [+2 authors] ...,
Gregory E. Crawford
Myong-Hee Sung
Ross C. Hardison
Gerd A. Blobel

First Published November 4, 2014

Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis

Maxim Pimkin
Andrew V. Kossenkov
Tejaswini Mishra
Christapher S. Morrissey
Weisheng Wu
Cheryl A. Keller Gerd A. Blobel
... [+2 authors] ...,
Dongwon Lee
Michael A. Beer
Ross C. Hardison
Mitchell J. Weiss

First Published October 15, 2014

Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis

Weisheng Wu
Christapher S. Morrissey
Cheryl A. Keller
Tejaswini Mishra
Maxim Pimkin
Gerd A. Blobel
Mitchell J. Weiss
Ross C. Hardison

First Published October 15, 2014

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