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Research

Epigenetic characterization of pseudogenes across human tissues

  • Yunzhe Jiang
  • Beatrice Borsari
  • Mark Gerstein
  • First Published April 15, 2026
Resource

A map of enhancer regions in primary human neural progenitor cells using capture STARR-seq

  • Sophia C. Gaynor-Gillett
  • Lijun Cheng
  • Manman Shi
  • Jason Liu
  • Gaoyuan Wang
  • Megan Spector Qiuyu Guo Le Qi Mary Flaherty Martha Wall Ahyeon Hwang Mengting Gu Zhanlin Chen Yuhang Chen Jennifer R. Moran Jing Zhang
  • ... [+11 authors] ...,
  • Donghoon Lee
  • Mark Gerstein
  • Daniel Geschwind
  • Kevin P. White
  • First Published July 11, 2025
Resource

Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships" > Binding profiles for 961 Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships

  • Michelle Kudron
  • Louis Gevirtzman
  • Alec Victorsen
  • Bridget C. Lear
  • Jiahao Gao
  • Jinrui Xu Swapna Samanta Emily Frink Adri Tran-Pearson Chau Huynh Dionne Vafeados Ann Hammonds William Fisher Martha Wall Greg Wesseling Vanessa Hernandez Zhichun Lin Mary Kasparian Kevin White Ravi Allada Mark Gerstein
  • ... [+16 authors] ...,
  • LaDeana Hillier
  • Susan E. Celniker
  • Valerie Reinke
  • Robert H. Waterston
  • First Published October 22, 2024
Research

A dynamic and integrated epigenetic program at distal regions orchestrates transcriptional responses to VEGFA

  • Shiyan Wang
  • Jiahuan Chen
  • Sara P. Garcia
  • Xiaodong Liang
  • Fang Zhang
  • Pengyi Yan Huijing Yu Weiting Wei Zixuan Li Jingfang Wang Huangying Le Zeguang Han Xusheng Luo Daniel S. Day Sean M. Stevens Yan Zhang Peter J. Park Zhi-jie Liu
  • ... [+13 authors] ...,
  • Kun Sun
  • Guo-cheng Yuan
  • William T. Pu
  • Bing Zhang
  • First Published January 22, 2019
Resource

PepQuery enables fast, accurate, and convenient proteomic validation of novel genomic alterations

  • Bo Wen
  • Xiaojing Wang
  • Bing Zhang
  • First Published January 4, 2019
Research

Mus caroli and Mus pahari genomes" > Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

  • David Thybert
  • Maša Roller
  • Fábio C.P. Navarro
  • Ian Fiddes
  • Ian Streeter
  • Christine Feig David Martin-Galvez Mikhail Kolmogorov Václav Janoušek Wasiu Akanni Bronwen Aken Sarah Aldridge Varshith Chakrapani William Chow Laura Clarke Carla Cummins Anthony Doran Matthew Dunn Leo Goodstadt Kerstin Howe Matthew Howell Ambre-Aurore Josselin Robert C. Karn Christina M. Laukaitis Lilue Jingtao Fergal Martin Matthieu Muffato Stefanie Nachtweide Michael A. Quail Cristina Sisu Mario Stanke Klara Stefflova Cock Van Oosterhout Frederic Veyrunes Ben Ward Fengtang Yang Golbahar Yazdanifar Amonida Zadissa David J. Adams Alvis Brazma Mark Gerstein Benedict Paten
  • ... [+37 authors] ...,
  • Son Pham
  • Thomas M. Keane
  • Duncan T. Odom
  • Paul Flicek
  • First Published March 21, 2018
Research

Comparative genome analysis of programmed DNA elimination in nematodes

  • Jianbin Wang
  • Shenghan Gao
  • Yulia Mostovoy
  • Yuanyuan Kang
  • Maxim Zagoskin
  • Yongqiao Sun Bing Zhang Laura K. White Alice Easton Thomas B. Nutman
  • ... [+5 authors] ...,
  • Pui-Yan Kwok
  • Songnian Hu
  • Martin K. Nielsen
  • Richard E. Davis
  • First Published November 8, 2017
Research

One thousand somatic SNVs per skin fibroblast cell set baseline of mosaic mutational load with patterns that suggest proliferative origin

  • Alexej Abyzov
  • Livia Tomasini
  • Bo Zhou
  • Nikolaos Vasmatzis
  • Gianfilippo Coppola
  • Mariangela Amenduni Reenal Pattni Michael Wilson
  • ... [+3 authors] ...,
  • Mark Gerstein
  • Sherman Weissman
  • Alexander E. Urban
  • Flora M. Vaccarino
  • First Published February 24, 2017
Research

Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division

  • Alexej Abyzov
  • Rebecca Iskow
  • Omer Gokcumen
  • David W. Radke
  • Suganthi Balasubramanian
  • Baikang Pei
  • Lukas Habegger
  • Charles Lee
  • Mark Gerstein
  • First Published September 11, 2013
Research

A dynamic H3K27ac signature identifies VEGFA-stimulated endothelial enhancers and requires EP300 activity

  • Bing Zhang
  • Daniel S. Day
  • Joshua W. Ho
  • Lingyun Song
  • Jingjing Cao
  • Danos Christodoulou
  • ... [+1 authors] ...,
  • Jonathan G. Seidman
  • Gregory E. Crawford
  • Peter J. Park
  • William T. Pu
  • First Published April 1, 2013
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