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Resource

Single-nucleus multiomic profiling of the aging mouse substantia nigra reveals conserved gene alterations linked to Parkinson's disease

  • Kangli Wang
  • Weikun Xia
  • Yingli Gu
  • Songpeng Zu
  • Qian Yang
  • Maria Luisa Amaral Yaozhi Wang
  • ... [+2 authors] ...,
  • Allen Wang
  • Xiang-Dong Fu
  • William C. Mobley
  • Bing Ren
  • First Published March 4, 2026
Research

KDM1A maintains genome-wide homeostasis of transcriptional enhancers

  • Saurabh Agarwal
  • Katherine M. Bonefas
  • Patricia M. Garay
  • Emily Brookes
  • Yumie Murata-Nakamura
  • Robert S. Porter
  • Todd S. Macfarlan
  • Bing Ren
  • Shigeki Iwase
  • First Published January 7, 2021
Method

A new class of temporarily phenotypic enhancers identified by CRISPR/Cas9-mediated genetic screening

  • Yarui Diao
  • Bin Li
  • Zhipeng Meng
  • Inkyung Jung
  • Ah Young Lee
  • Jesse Dixon
  • ... [+1 authors] ...,
  • Lenka Maliskova
  • Kun-liang Guan
  • Yin Shen
  • Bing Ren
  • First Published January 26, 2016
Research

Tissue-specific SMARCA4 binding at active and repressed regulatory elements during embryogenesis

  • Catia Attanasio
  • Alex S. Nord
  • Yiwen Zhu
  • Matthew J. Blow
  • Simon C. Biddie
  • Eric M. Mendenhall Jesse Dixon Crystal Wright Roya Hosseini Jennifer A. Akiyama Amy Holt Ingrid Plajzer-Frick Malak Shoukry Veena Afzal Bing Ren
  • ... [+10 authors] ...,
  • Bradley E. Bernstein
  • Edward M. Rubin
  • Axel Visel
  • Len A. Pennacchio
  • First Published April 21, 2014
Research

cis-mediated silencing in somatic cells" > Systematic mapping of occluded genes by cell fusion reveals prevalence and stability of cis-mediated silencing in somatic cells

  • Timothy J. Looney
  • Li Zhang
  • Chih-Hsin Chen
  • Jae Hyun Lee
  • Sheila Chari
  • Frank Fuxiang Mao Mattia Pelizzola Lu Zhang Ryan Lister Samuel W. Baker Croydon J. Fernandes Jedidiah Gaetz Kara M. Foshay Kayla L. Clift Zhenyu Zhang Wei-Qiang Li Eric J. Vallender Ulrich Wagner Jane Yuxia Qin Katelyn J. Michelini Branimir Bugarija Donghyun Park Emmanuel Aryee Thomas Stricker Jie Zhou Kevin P. White Bing Ren
  • ... [+22 authors] ...,
  • Gary P. Schroth
  • Joseph R. Ecker
  • Andy Peng Xiang
  • Bruce T. Lahn
  • First Published December 5, 2013
Research

CBX3 regulates efficient RNA processing genome-wide

  • Andrea Smallwood
  • Gary C. Hon
  • Fulai Jin
  • Ryan E. Henry
  • Joaquín M. Espinosa
  • Bing Ren
  • First Published June 8, 2012
Research

Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer

  • Gary C. Hon
  • R. David Hawkins
  • Otavia L. Caballero
  • Christine Lo
  • Ryan Lister
  • Mattia Pelizzola Armand Valsesia Zhen Ye Samantha Kuan Lee E. Edsall Anamaria Aranha Camargo Brian J. Stevenson Joseph R. Ecker
  • ... [+8 authors] ...,
  • Vineet Bafna
  • Robert L. Strausberg
  • Andrew J. Simpson
  • Bing Ren
  • First Published December 7, 2011
LETTER

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

  • David S. Johnson
  • Wei Li
  • D. Benjamin Gordon
  • Arindam Bhattacharjee
  • Bo Curry
  • Jayati Ghosh Leonardo Brizuela Jason S. Carroll Myles Brown Paul Flicek Christoph M. Koch Ian Dunham Mark Bieda Xiaoqin Xu Peggy J. Farnham Philipp Kapranov David A. Nix Thomas R. Gingeras Xinmin Zhang Heather Holster Nan Jiang Roland D. Green Jun S. Song Scott A. McCuine Elizabeth Anton Loan Nguyen Nathan D. Trinklein Zhen Ye Keith Ching David Hawkins Bing Ren Peter C. Scacheri Joel Rozowsky Alexander Karpikov Ghia Euskirchen Sherman Weissman Mark Gerstein Michael Snyder Annie Yang Zarmik Moqtaderi Heather Hirsch Hennady P. Shulha Yutao Fu Zhiping Weng
  • ... [+39 authors] ...,
  • Kevin Struhl
  • Richard M. Myers
  • Jason D. Lieb
  • X. Shirley Liu
  • First Published February 7, 2008
LETTER

Genome-wide mapping and analysis of active promoters in mouse embryonic stem cells and adult organs

  • Leah O. Barrera
  • Zirong Li
  • Andrew D. Smith
  • Karen C. Arden
  • Webster K. Cavenee
  • Michael Q. Zhang
  • Roland D. Green
  • Bing Ren
  • First Published November 27, 2007
Methods

Direct isolation and identification of promoters in the human genome

  • Tae Hoon Kim
  • Leah O. Barrera
  • Chunxu Qu
  • Sara Van Calcar
  • Nathan D. Trinklein
  • Sara J. Cooper Rosa M. Luna
  • ... [+2 authors] ...,
  • Christopher K. Glass
  • Michael G. Rosenfeld
  • Richard M. Myers
  • Bing Ren
  • First Published May 17, 2005
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