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Your search for returned 31 results

Perspective

The Topological Regulatory Logic of noncoding RNA–mediated gene expression

Thomas R. Gingeras

First Published June 17, 2026

Method

Bombyx mori" > High-throughput and genome-scale targeted mutagenesis using CRISPR in a nonmodel multicellular organism, Bombyx mori

Sanyuan Ma
Tong Zhang
Ruolin Wang
Pan Wang
Yue Liu
Jiasong Chang Aoming Wang Xinhui Lan Le Sun Hao Sun Run Shi Wei Lu Dan Liu Na Zhang Wenbo Hu
... [+10 authors] ...,
Xiaogang Wang
Weiqing Xing
Ling Jia
Qingyou Xia

First Published January 8, 2024

Method

Partial alignment of multislice spatially resolved transcriptomics data

Xinhao Liu
Ron Zeira
Benjamin J. Raphael

First Published August 8, 2023

Method

Reconstruction of clone- and haplotype-specific cancer genome karyotypes from bulk tumor samples

Sergey Aganezov
Benjamin J. Raphael

First Published September 4, 2020

Resource

A limited set of transcriptional programs define major cell types

Alessandra Breschi
Manuel Muñoz-Aguirre
Valentin Wucher
Carrie A. Davis
Diego Garrido-Martín
Sarah Djebali Jesse Gillis Dmitri D. Pervouchine Anna Vlasova Alexander Dobin Chris Zaleski Jorg Drenkow Cassidy Danyko Alexandra Scavelli
... [+9 authors] ...,
Ferran Reverter
Michael P. Snyder
Thomas R. Gingeras
Roderic Guigó

First Published July 29, 2020

Method

Bombyx mori" > Genome-wide CRISPR screening reveals genes essential for cell viability and resistance to abiotic and biotic stresses in Bombyx mori

Jiasong Chang
Ruolin Wang
Kai Yu
Tong Zhang
Xiaoxu Chen
Yue Liu
... [+1 authors] ...,
Run Shi
Xiaogang Wang
Qingyou Xia
Sanyuan Ma

First Published May 18, 2020

Resource

Dynamics of microRNA expression during mouse prenatal development

Sorena Rahmanian
Rabi Murad
Alessandra Breschi
Weihua Zeng
Mark Mackiewicz
Brian Williams Carrie A. Davis Brian Roberts Sarah Meadows Dianna Moore Diane Trout Chris Zaleski Alex Dobin Lei-Hoon Sei Jorg Drenkow Alex Scavelli Thomas R. Gingeras
... [+12 authors] ...,
Barbara J. Wold
Richard M. Myers
Roderic Guigó
Ali Mortazavi

First Published October 23, 2019

Research

Alu elements suggests cell-type–specific enhancer function" > Genome-wide analysis of polymerase III–transcribed Alu elements suggests cell-type–specific enhancer function

Xiao-Ou Zhang
Thomas R. Gingeras
Zhiping Weng

First Published August 14, 2019

Method

Single-cell sequencing data reveal widespread recurrence and loss of mutational hits in the life histories of tumors

Jack Kuipers
Katharina Jahn
Benjamin J. Raphael
Niko Beerenwinkel

First Published October 13, 2017

Resource

GenomeVIP: a cloud platform for genomic variant discovery and interpretation

R. Jay Mashl
Adam D. Scott
Kuan-lin Huang
Matthew A. Wyczalkowski
Christopher J. Yoon
Beifang Niu Erin DeNardo Venkata D. Yellapantula Robert E. Handsaker Ken Chen Daniel C. Koboldt Kai Ye
... [+7 authors] ...,
David Fenyö
Benjamin J. Raphael
Michael C. Wendl
Li Ding

First Published May 18, 2017

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