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An atlas of alternative splicing profiles and functional associations reveals new regulatory programs and genes that simultaneously express multiple major isoforms

Javier Tapial
Kevin C.H. Ha
Timothy Sterne-Weiler
André Gohr
Ulrich Braunschweig
Antonio Hermoso-Pulido Mathieu Quesnel-Vallières Jon Permanyer Reza Sodaei Yamile Marquez Luca Cozzuto Xinchen Wang Melisa Gómez-Velázquez Teresa Rayon
... [+9 authors] ...,
Miguel Manzanares
Julia Ponomarenko
Benjamin J. Blencowe
Manuel Irimia

First Published August 30, 2017

Widespread intron retention in mammals functionally tunes transcriptomes

Ulrich Braunschweig
Nuno L. Barbosa-Morais
Qun Pan
Emil N. Nachman
Babak Alipanahi
Thomas Gonatopoulos-Pournatzis
Brendan Frey
Manuel Irimia
Benjamin J. Blencowe

First Published September 25, 2014

Caenorhabditis elegans" > Genome-wide analysis of alternative splicing in Caenorhabditis elegans

Arun K. Ramani
John A. Calarco
Qun Pan
Sepand Mavandadi
Ying Wang
Andrew C. Nelson Leo J. Lee
... [+2 authors] ...,
Quaid Morris
Benjamin J. Blencowe
Mei Zhen
Andrew G. Fraser

First Published December 22, 2010

Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation

Joanna Y. Ip
Dominic Schmidt
Qun Pan
Arun K. Ramani
Andrew G. Fraser
Duncan T. Odom
Benjamin J. Blencowe

First Published December 16, 2010

A systematic analysis of intronic sequences downstream of 5′ splice sites reveals a widespread role for U-rich motifs and TIA1/TIAL1 proteins in alternative splicing regulation

Isabel Aznarez
Yoseph Barash
Ofer Shai
David He
Julian Zielenski
Lap-Chee Tsui
... [+1 authors] ...,
John Parkinson
Brendan J. Frey
Johanna M. Rommens
Benjamin J. Blencowe

First Published May 2, 2008