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Method

Highly accurate assembly polishing with DeepPolisher

  • First Published May 19, 2025
Research

Assessing DNA methylation detection for primary human tissue using Nanopore sequencing

  • First Published March 7, 2025
Method

Phased nanopore assembly with Shasta and modular graph phasing with GFAse

  • First Published April 16, 2024
Research

Gaps and complex structurally variant loci in phased genome assemblies

  • First Published May 10, 2023
Method

A complete pedigree-based graph workflow for rare candidate variant analysis

  • First Published April 28, 2022
Research

Positive selection in noncoding genomic regions of vocal learning birds is associated with genes implicated in vocal learning and speech functions in humans

  • First Published October 19, 2021
Perspective

Applications of single-cell genomics and computational strategies to study common disease and population-level variation

  • First Published October 1, 2021
Method

A joint deep learning model enables simultaneous batch effect correction, denoising, and clustering in single-cell transcriptomics

  • First Published May 25, 2021
Method

Chromosome assembly of large and complex genomes using multiple references

  • First Published October 19, 2018
Method

Comparative Annotation Toolkit (CAT)—simultaneous clade and personal genome annotation

  • First Published June 8, 2018
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