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Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs

Michiel de Hoon
Alessandro Bonetti
Charles Plessy
Yoshinari Ando
Chung-Chau Hon
Yuri Ishizu Masayoshi Itoh Sachi Kato Dongyan Lin Sho Maekawa Mitsuyoshi Murata Hiromi Nishiyori Jay W. Shin Jens Stolte Ana Maria Suzuki Michihira Tagami Hazuki Takahashi Supat Thongjuea
... [+13 authors] ...,
Alistair R.R. Forrest
Yoshihide Hayashizaki
Juha Kere
Piero Carninci

First Published August 12, 2022

Comparative transcriptomics of primary cells in vertebrates

Tanvir Alam
Saumya Agrawal
Jessica Severin
Robert S. Young
Robin Andersson
Erik Arner Akira Hasegawa Marina Lizio Jordan A. Ramilowski Imad Abugessaisa Yuri Ishizu Shohei Noma Hiroshi Tarui Martin S. Taylor Timo Lassmann Masayoshi Itoh Takeya Kasukawa Hideya Kawaji Luigi Marchionni Guojun Sheng Alistair R.R. Forrest
... [+16 authors] ...,
Levon M. Khachigian
Yoshihide Hayashizaki
Piero Carninci
Michiel J.L. de Hoon

First Published July 27, 2020

Massive reshaping of genome–nuclear lamina interactions during oncogene-induced senescence

Christelle Lenain
Carolyn A. de Graaf
Ludo Pagie
Nils L. Visser
Marcel de Haas
Sandra S. de Vries
Daniel Peric-Hupkes
Bas van Steensel
Daniel S. Peeper

First Published September 15, 2017

Drosophila housekeeping promoters facilitates their expression" > Clustering of Drosophila housekeeping promoters facilitates their expression

Marc Corrales
Aránzazu Rosado
Ruggero Cortini
Joris van Arensbergen
Bas van Steensel
Guillaume J. Filion

First Published April 18, 2017

Small chromosomal regions position themselves autonomously according to their chromatin class

Harmen J.G. van de Werken
Josien C. Haan
Yana Feodorova
Dominika Bijos
An Weuts
Koen Theunis Sjoerd J.B. Holwerda Wouter Meuleman Ludo Pagie Katharina Thanisch Parveen Kumar Heinrich Leonhardt Peter Marynen Bas van Steensel
... [+9 authors] ...,
Thierry Voet
Wouter de Laat
Irina Solovei
Boris Joffe

First Published March 24, 2017

The frequent evolutionary birth and death of functional promoters in mouse and human

Robert S. Young
Yoshihide Hayashizaki
Robin Andersson
Albin Sandelin
Hideya Kawaji
Masayoshi Itoh Timo Lassmann
... [+2 authors] ...,
Piero Carninci
Wendy A. Bickmore
Alistair R. Forrest
Martin S. Taylor

First Published July 30, 2015

Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing

Hideya Kawaji
Marina Lizio
Masayoshi Itoh
Mutsumi Kanamori-Katayama
Ai Kaiho
Hiromi Nishiyori-Sueki Jay W. Shin Miki Kojima-Ishiyama Mitsuoki Kawano Mitsuyoshi Murata Noriko Ninomiya-Fukuda Sachi Ishikawa-Kato Sayaka Nagao-Sato
... [+8 authors] ...,
Shohei Noma
Yoshihide Hayashizaki
Alistair R.R. Forrest
Piero Carninci

First Published March 27, 2014

Constitutive nuclear lamina–genome interactions are highly conserved and associated with A/T-rich sequence

Wouter Meuleman
Daan Peric-Hupkes
Jop Kind
Jean-Bernard Beaudry
Ludo Pagie
Manolis Kellis
Marcel Reinders
Lodewyk Wessels
Bas van Steensel

First Published November 2, 2012

Promoter architecture of mouse olfactory receptor genes

Charles Plessy
Giovanni Pascarella
Nicolas Bertin
Altuna Akalin
Claudia Carrieri
Anne Vassalli Dejan Lazarevic Jessica Severin Christina Vlachouli Roberto Simone Geoffrey J. Faulkner Jun Kawai Carsten O. Daub Silvia Zucchelli Yoshihide Hayashizaki
... [+10 authors] ...,
Peter Mombaerts
Boris Lenhard
Stefano Gustincich
Piero Carninci

First Published December 22, 2011

Unamplified cap analysis of gene expression on a single-molecule sequencer

Mutsumi Kanamori-Katayama
Masayoshi Itoh
Hideya Kawaji
Timo Lassmann
Shintaro Katayama
Miki Kojima Nicolas Bertin Ai Kaiho Noriko Ninomiya
... [+4 authors] ...,
Carsten O. Daub
Piero Carninci
Alistair R.R. Forrest
Yoshihide Hayashizaki

First Published May 19, 2011

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