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Rearrangements of viral and human genomes at human papillomavirus integration events and their allele-specific impacts on cancer genome regulation

  • Vanessa L. Porter
  • Michelle Ng
  • Kieran O'Neill
  • Signe MacLennan
  • Richard D. Corbett
  • Luka Culibrk Zeid Hamadeh Marissa Iden Rachel Schmidt Shirng-Wern Tsaih Carolyn Nakisige Martin Origa Jackson Orem Glenn Chang Jeremy Fan Ka Ming Nip Vahid Akbari Simon K. Chan James Hopkins Richard A. Moore Eric Chuah Karen L. Mungall Andrew J. Mungall
  • ... [+18 authors] ...,
  • Inanc Birol
  • Steven J.M. Jones
  • Janet S. Rader
  • Marco A. Marra
  • First Published December 5, 2024

High-resolution structural genomics reveals new therapeutic vulnerabilities in glioblastoma

  • Michael J. Johnston
  • Ana Nikolic
  • Nicoletta Ninkovic
  • Paul Guilhamon
  • Florence M.G. Cavalli
  • Steven Seaman Franz J. Zemp John Lee Aly Abdelkareem Katrina Ellestad Alex Murison Michelle M. Kushida Fiona J. Coutinho Yussanne Ma Andrew J. Mungall Richard Moore Marco A. Marra Michael D. Taylor Peter B. Dirks Trevor J. Pugh Sorana Morrissy
  • ... [+16 authors] ...,
  • Bradley St Croix
  • Douglas J. Mahoney
  • Mathieu Lupien
  • Marco Gallo
  • First Published June 27, 2019

Corrigendum: A comparative analysis of whole genome sequencing of esophageal adenocarcinoma pre- and post-chemotherapy

  • Ayesha Noorani
  • Jan Bornschein
  • Andy G. Lynch
  • Maria Secrier
  • Achilleas Achilleos
  • Matthew Eldridge Lawrence Bower Jamie M.J. Weaver Jason Crawte Chin-Ann Ong Nicholas Shannon Shona MacRae Nicola Grehan Barbara Nutzinger
  • ... [+9 authors] ...,
  • Maria O'Donovan
  • Richard Hardwick
  • Simon Tavaré
  • Rebecca C. Fitzgerald
  • First Published October 3, 2017

A comparative analysis of whole genome sequencing of esophageal adenocarcinoma pre- and post-chemotherapy

  • Ayesha Noorani
  • Jan Bornschein
  • Andy G. Lynch
  • Maria Secrier
  • Achilleas Achilleos
  • Matthew Eldridge Lawrence Bower Jamie M.J. Weaver Jason Crawte Chin-Ann Ong Nicholas Shannon Shona MacRae Nicola Grehan Barbara Nutzinger Maria O'Donovan Richard Hardwick Simon Tavaré Rebecca C. Fitzgerald Rachael Fels Elliott Paul A.W. Edwards Xiaodun Li Hamza Chettouh Gianmarco Contini Eleanor Gregson Sebastian Zeki Laura Smith Zarah Abdullahi Rachel de la Rue Ahmad Miremadi Shalini Malhotra Mike L. Smith Jim Davies Charles Crichton Nick Carroll Peter Safranek Andrew Hindmarsh Vijayendran Sujendran Richard Turkington Stephen J. Hayes Yeng Ang Shaun R. Preston Sarah Oakes Izhar Bagwan Vicki Save Richard J.E. Skipworth Ted R. Hupp J. Robert O'Neill Olga Tucker Andrew Beggs Philippe Taniere Sonia Puig Timothy J. Underwood Fergus Noble Jack Owsley Hugh Barr Neil Shepherd Oliver Old Jesper Lagergren James Gossage Andrew Davies Fuju Chang Janine Zylstra Grant Sanders Richard Berrisford Catherine Harden David Bunting Mike Lewis Ed Cheong Bhaskar Kumar Simon L. Parsons John Saunders Irshad Soomro Philip Kaye Laurence Lovat Rehan Haidry Victor Eneh Laszlo Igali Ian M. Welch Michael Scott Shamila Sothi Sari Suortamo Suzy Lishman Anna Grabowska
  • ... [+78 authors] ...,
  • Christopher J. Peters
  • George B. Hanna
  • David Khoo
  • Duncan Beardsmore
  • First Published May 2, 2017

TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data

  • Gavin Ha
  • Andrew Roth
  • Jaswinder Khattra
  • Julie Ho
  • Damian Yap
  • Leah M. Prentice Nataliya Melnyk Andrew McPherson Ali Bashashati Emma Laks Justina Biele Jiarui Ding Alan Le Jamie Rosner Karey Shumansky Marco A. Marra C. Blake Gilks
  • ... [+12 authors] ...,
  • David G. Huntsman
  • Jessica N. McAlpine
  • Samuel Aparicio
  • Sohrab P. Shah
  • First Published July 24, 2014

Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm

  • Bo Zhang
  • Yan Zhou
  • Nan Lin
  • Rebecca F. Lowdon
  • Chibo Hong
  • Raman P. Nagarajan Jeffrey B. Cheng Daofeng Li Michael Stevens Hyung Joo Lee Xiaoyun Xing Jia Zhou Vasavi Sundaram GiNell Elliott Junchen Gu Taoping Shi Philippe Gascard Mahvash Sigaroudinia Thea D. Tlsty Theresa Kadlecek Arthur Weiss Henriette O’Geen Peggy J. Farnham Cécile L. Maire Keith L. Ligon Pamela A.F. Madden Angela Tam Richard Moore Martin Hirst
  • ... [+24 authors] ...,
  • Marco A. Marra
  • Baoxue Zhang
  • Joseph F. Costello
  • Ting Wang
  • First Published June 26, 2013

Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods

  • Michael Stevens
  • Jeffrey B. Cheng
  • Daofeng Li
  • Mingchao Xie
  • Chibo Hong
  • Cécile L. Maire Keith L. Ligon
  • ... [+2 authors] ...,
  • Martin Hirst
  • Marco A. Marra
  • Joseph F. Costello
  • Ting Wang
  • First Published June 26, 2013

Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer

  • Gavin Ha
  • Andrew Roth
  • Daniel Lai
  • Ali Bashashati
  • Jiarui Ding
  • Rodrigo Goya Ryan Giuliany Jamie Rosner Arusha Oloumi Karey Shumansky Suet-Feung Chin Gulisa Turashvili Martin Hirst
  • ... [+8 authors] ...,
  • Carlos Caldas
  • Marco A. Marra
  • Samuel Aparicio
  • Sohrab P. Shah
  • First Published May 25, 2012

Extensive relationship between antisense transcription and alternative splicing in the human genome

  • A. Sorana Morrissy
  • Malachi Griffith
  • Marco A. Marra
  • First Published June 30, 2011

Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence" > Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence

  • Eugene Berezikov
  • Nicolas Robine
  • Anastasia Samsonova
  • Jakub O. Westholm
  • Ammar Naqvi
  • Jui-Hung Hung Katsutomo Okamura Qi Dai Diane Bortolamiol-Becet Raquel Martin Yongjun Zhao Phillip D. Zamore Gregory J. Hannon
  • ... [+8 authors] ...,
  • Marco A. Marra
  • Zhiping Weng
  • Norbert Perrimon
  • Eric C. Lai
  • First Published December 22, 2010
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