Research
Functional characterization of enhancer activity during a long terminal repeat's evolution
- First Published October 3, 2022
Research
Genomic environments scale the activities of diverse core promoters
- First Published December 27, 2021
Research
Bos taurus reveals pervasiveness of X–Y arms races in mammalian lineages" > Sequence analysis in Bos taurus reveals pervasiveness of X–Y arms races in mammalian lineages
- First Published November 18, 2020
Research
cis-regulatory activity" > Local sequence features that influence AP-1 cis-regulatory activity
- First Published January 5, 2018
Corrigendum
Corrigendum: Discovery and genotyping of structural variation from long-read haploid genome sequence data
- First Published January 2, 2018
Corrigendum
Corrigendum: The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2
- First Published September 1, 2017
Resource
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
- First Published April 10, 2017
Research
Discovery and genotyping of structural variation from long-read haploid genome sequence data
- First Published November 28, 2016
Research
Interchromosomal core duplicons drive both evolutionary instability and disease susceptibility of the Chromosome 8p23.1 region
- First Published October 7, 2016
Research
Pangolin genomes and the evolution of mammalian scales and immunity
- First Published August 10, 2016
Research
cis-regulation in embryonic stem cells" > Interactions between pluripotency factors specify cis-regulation in embryonic stem cells
- First Published April 15, 2016
Method
INTEGRATE: gene fusion discovery using whole genome and transcriptome data
- First Published November 10, 2015
Research
Promoter-distal RNA polymerase II binding discriminates active from inactive CCAAT/ enhancer-binding protein beta binding sites
- First Published October 20, 2015
Resource
Single haplotype assembly of the human genome from a hydatidiform mole
- First Published November 4, 2014
Research
High-throughput functional testing of ENCODE segmentation predictions
- First Published July 17, 2014
Resource
Subtelomeric CTCF and cohesin binding site organization using improved subtelomere assemblies and a novel annotation pipeline
- First Published March 27, 2014
Method
Reconstructing complex regions of genomes using long-read sequencing technology
- First Published January 13, 2014
Method
Massively parallel synthetic promoter assays reveal the in vivo effects of binding site variants
- First Published August 6, 2013
Research
The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2
- First Published March 14, 2012
Research
Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee
- First Published June 17, 2011
LETTER
Sequencing human–gibbon breakpoints of synteny reveals mosaic new insertions at rearrangement sites
- First Published November 24, 2008
RESOURCE
Haplotype sorting using human fosmid clone end-sequence pairs
- First Published October 3, 2008
ARTICLE
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
- First Published June 13, 2007
RESOURCE
PolyScan: An automatic indel and SNP detection approach to the analysis of human resequencing data
- First Published April 6, 2007
Methods
Discovery, validation, and genetic dissection of transcription factor binding sites by comparative and functional genomics
- First Published August 2, 2005
ARTICLE
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
- First Published July 15, 2005
LETTER
Punctuated duplication seeding events during the evolution of human chromosome 2p11
- First Published June 17, 2005
LETTER
Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana" > Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana
- First Published April 1, 2005
RESOURCE
EAnnot: A genome annotation tool using experimental evidence
- First Published December 1, 2004
LETTER
Analysis of Human mRNAs With the Reference Genome Sequence Reveals Potential Errors, Polymorphisms, and RNA Editing
- First Published October 15, 2004
Chicken Special/Letters
The repetitive landscape of the chicken genome
- First Published July 15, 2004
METHODS
Theories and Applications for Sequencing Randomly Selected Clones
- First Published January 18, 2001
GENOME METHODS
A Transposon-Based Strategy for Sequencing Repetitive DNA in Eukaryotic Genomes
- First Published May 1, 1997