Method
Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC
- First Published April 10, 2025
Research
Functional characterization of enhancer activity during a long terminal repeat's evolution
- First Published October 3, 2022
Research
Genomic environments scale the activities of diverse core promoters
- First Published December 27, 2021
Research
Sequence determinants of polyadenylation-mediated regulation
- First Published September 17, 2019
Research
cis-regulatory activity" > Local sequence features that influence AP-1 cis-regulatory activity
- First Published January 5, 2018
Corrigendum
Corrigendum: Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators
- First Published March 1, 2017
Research
Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators
- First Published December 13, 2016
Research
cis-regulation in embryonic stem cells" > Interactions between pluripotency factors specify cis-regulation in embryonic stem cells
- First Published April 15, 2016
Research
Promoter-distal RNA polymerase II binding discriminates active from inactive CCAAT/ enhancer-binding protein beta binding sites
- First Published October 20, 2015
Corrigendum
Corrigendum: Unraveling determinants of transcription factor binding outside the core binding site
- First Published September 1, 2015
Research
Core promoter sequence in yeast is a major determinant of expression level
- First Published May 12, 2015
Method
Unraveling determinants of transcription factor binding outside the core binding site
- First Published March 11, 2015
Research
Molecular dissection of the genetic mechanisms that underlie expression conservation in orthologous yeast ribosomal promoters
- First Published October 7, 2014
Research
High-throughput functional testing of ENCODE segmentation predictions
- First Published July 17, 2014
Method
Probing the effect of promoters on noise in gene expression using thousands of designed sequences
- First Published July 16, 2014
Resource
Inferring gene expression from ribosomal promoter sequences, a crowdsourcing approach
- First Published August 15, 2013
Method
Massively parallel synthetic promoter assays reveal the in vivo effects of binding site variants
- First Published August 6, 2013
Research
Two DNA-encoded strategies for increasing expression with opposing effects on promoter dynamics and transcriptional noise
- First Published February 12, 2013
Research
Compensation for differences in gene copy number among yeast ribosomal proteins is encoded within their promoters
- First Published October 18, 2011
Research
C. elegans" > High nucleosome occupancy is encoded at X-linked gene promoters in C. elegans
- First Published December 22, 2010
Research
p53 binds preferentially to genomic regions with high DNA-encoded nucleosome occupancy
- First Published August 17, 2010
Methods
Incorporating nucleosomes into thermodynamic models of transcription regulation
- First Published May 18, 2009
Methods
cis-regulatory motifs in human core promoters" > Systematic functional characterization of cis-regulatory motifs in human core promoters
- First Published February 6, 2008
Methods
Discovery, validation, and genetic dissection of transcription factor binding sites by comparative and functional genomics
- First Published August 2, 2005