Search | Genome Research

Method

Single-cell transcriptome analysis reveals onco-fetal reprogramming with implications for drug resistance and clinical outcome

Yongle Xu
Shaoyi Chen
Zhenglin Lu
Yuqi Fan
Zhaoxin Liu
Wenhui Liu Shiqian Zhang Weijian Lu Jianing Li Changbo Yang Gengdong Chen Jingyi Shi Na Ding Shanshan Liu Xilin Sun Qinghua Jiang
... [+11 authors] ...,
Hui Zhi
Haoxiu Sun
Mantang Qiu
Tingting Shao

First Published October 9, 2026

Research

Genome-wide promoter assembly in E. coli measured at single-base resolution

Jordan John
Javaid Jabbar
Nitika Badjatia
Matthew J. Rossi
William K.M. Lai
B. Franklin Pugh

First Published April 28, 2022

Resource

A ChIP-exo screen of 887 Protein Capture Reagents Program transcription factor antibodies in human cells

William K.M. Lai
Luca Mariani
Gerson Rothschild
Edwin R. Smith
Bryan J. Venters
Thomas R. Blanda Prashant K. Kuntala Kylie Bocklund Joshua Mairose Sarah N. Dweikat Katelyn Mistretta Matthew J. Rossi Daniela James James T. Anderson Sabrina K. Phanor Wanwei Zhang Zibo Zhao Avani P. Shah Katherine Novitzky Eileen McAnarney Michael-C. Keogh
... [+16 authors] ...,
Ali Shilatifard
Uttiya Basu
Martha L. Bulyk
B. Franklin Pugh

First Published August 23, 2021

Resource

A chromosome-level assembly of the Atlantic herring genome—detection of a supergene and other signals of selection

Mats E. Pettersson
Christina M. Rochus
Fan Han
Junfeng Chen
Jason Hill
Ola Wallerman Guangyi Fan Xiaoning Hong Qiwu Xu He Zhang Shanshan Liu Xin Liu Leanne Haggerty Toby Hunt Fergal J. Martin
... [+10 authors] ...,
Paul Flicek
Ignas Bunikis
Arild Folkvord
Leif Andersson

First Published October 24, 2019

Research

Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment

Theodore Gouliouris
Kathy E. Raven
Danesh Moradigaravand
Catherine Ludden
Francesc Coll
Beth Blane Plamena Naydenova Carolyne Horner Nicholas M. Brown
... [+4 authors] ...,
Jukka Corander
Direk Limmathurotsakul
Julian Parkhill
Sharon J. Peacock

First Published March 21, 2019

Research

Genome-wide determinants of sequence-specific DNA binding of general regulatory factors

Matthew J. Rossi
William K.M. Lai
B. Franklin Pugh

First Published March 21, 2018

Research

Widespread and precise reprogramming of yeast protein–genome interactions in response to heat shock

Vinesh Vinayachandran
Rohit Reja
Matthew J. Rossi
Bongsoo Park
Lila Rieber
Chitvan Mittal
Shaun Mahony
B. Franklin Pugh

First Published February 14, 2018

Corrigendum

Corrigendum: Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland

Sandra Reuter
M. Estée Török
Matthew T.G. Holden
Rosy Reynolds
Kathy E. Raven
Beth Blane Tjibbe Donker Stephen D. Bentley David M. Aanensen Hajo Grundmann
... [+5 authors] ...,
Edward J. Feil
Brian G. Spratt
Julian Parkhill
Sharon J. Peacock

First Published September 1, 2017

Research

Systematic longitudinal survey of invasive Escherichia coli in England demonstrates a stable population structure only transiently disturbed by the emergence of ST131

Teemu Kallonen
Hayley J. Brodrick
Simon R. Harris
Jukka Corander
Nicholas M. Brown
Veronique Martin
Sharon J. Peacock
Julian Parkhill

First Published July 18, 2017

Research

Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion

James Hadfield
Simon R. Harris
Helena M.B. Seth-Smith
Surendra Parmar
Patiyan Andersson
Philip M. Giffard Julius Schachter Jeanne Moncada Louise Ellison María Lucía Gallo Vaulet Marcelo Rodríguez Fermepin Frans Radebe Suyapa Mendoza Sander Ouburg Servaas A. Morré Konrad Sachse Mirja Puolakkainen Suvi J. Korhonen Chris Sonnex Rebecca Wiggins Hamid Jalal Tamara Brunelli Patrizia Casprini Rachel Pitt Cathy Ison Alevtina Savicheva Elena Shipitsyna Ronza Hadad Laszlo Kari Matthew J. Burton David Mabey Anthony W. Solomon David Lewis Peter Marsh
... [+29 authors] ...,
Magnus Unemo
Ian N. Clarke
Julian Parkhill
Nicholas R. Thomson

First Published June 6, 2017

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Your search for returned 39 results

Method

Single-cell transcriptome analysis reveals onco-fetal reprogramming with implications for drug resistance and clinical outcome

Research

Genome-wide promoter assembly in E. coli measured at single-base resolution

Resource

A ChIP-exo screen of 887 Protein Capture Reagents Program transcription factor antibodies in human cells

Resource

A chromosome-level assembly of the Atlantic herring genome—detection of a supergene and other signals of selection

Research

Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment

Research

Genome-wide determinants of sequence-specific DNA binding of general regulatory factors

Research

Widespread and precise reprogramming of yeast protein–genome interactions in response to heat shock

Corrigendum

Corrigendum: Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland

Research

Systematic longitudinal survey of invasive Escherichia coli in England demonstrates a stable population structure only transiently disturbed by the emergence of ST131

Research

Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion

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Your search for returned 39 results

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