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Multicondition and multimodal temporal profile inference during mouse embryonic development

  • Ran Zhang
  • Chengxiang Qiu
  • Galina N. Filippova
  • Gang Li
  • Jay Shendure
  • Jean-Philippe Vert
  • Xinxian Deng
  • William Stafford Noble
  • Christine M. Disteche
  • First Published August 14, 2025

Caenorhabditis elegans nematodes" > Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes

  • Timothy J. Durham
  • Riza M. Daza
  • Louis Gevirtzman
  • Darren A. Cusanovich
  • Olubusayo Bolonduro
  • William Stafford Noble
  • Jay Shendure
  • Robert H. Waterston
  • First Published April 22, 2021

Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands

  • Brian S. Roberts
  • E. Christopher Partridge
  • Bryan A. Moyers
  • Vikram Agarwal
  • Kimberly M. Newberry
  • Beth K. Martin
  • Jay Shendure
  • Richard M. Myers
  • Gregory M. Cooper
  • First Published April 20, 2021

Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology" > Suppressor mutations in Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology

  • Adebola Enikanolaiye
  • Julie Ruston
  • Rong Zeng
  • Christine Taylor
  • Marijke Schrock
  • Christie M. Buchovecky
  • Jay Shendure
  • Elif Acar
  • Monica J. Justice
  • First Published April 21, 2020

A quantitative framework for characterizing the evolutionary history of mammalian gene expression

  • Jenny Chen
  • Ross Swofford
  • Jeremy Johnson
  • Beryl B. Cummings
  • Noga Rogel
  • Kerstin Lindblad-Toh
  • Wilfried Haerty
  • Federica di Palma
  • Aviv Regev
  • First Published December 14, 2018

ERAP2 transcripts under balancing selection" > Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection

  • Chun Jimmie Ye
  • Jenny Chen
  • Alexandra-Chloé Villani
  • Rachel E. Gate
  • Meena Subramaniam
  • Tushar Bhangale Mark N. Lee Towfique Raj Raktima Raychowdhury Weibo Li Noga Rogel Sean Simmons Selina H. Imboywa Portia I. Chipendo Cristin McCabe Michelle H. Lee Irene Y. Frohlich Barbara E. Stranger
  • ... [+13 authors] ...,
  • Philip L. De Jager
  • Aviv Regev
  • Tim Behrens
  • Nir Hacohen
  • First Published November 16, 2018

Corrigendum: A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

  • Fumitaka Inoue
  • Martin Kircher
  • Beth Martin
  • Gregory M. Cooper
  • Daniela M. Witten
  • Michael T. McManus
  • Nadav Ahituv
  • Jay Shendure
  • First Published May 1, 2018

A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

  • Fumitaka Inoue
  • Martin Kircher
  • Beth Martin
  • Gregory M. Cooper
  • Daniela M. Witten
  • Michael T. McManus
  • Nadav Ahituv
  • Jay Shendure
  • First Published November 9, 2016

Single-cell RNA-seq reveals changes in cell cycle and differentiation programs upon aging of hematopoietic stem cells

  • Monika S. Kowalczyk
  • Itay Tirosh
  • Dirk Heckl
  • Tata Nageswara Rao
  • Atray Dixit
  • Brian J. Haas
  • ... [+1 authors] ...,
  • Rebekka K. Schneider
  • Amy J. Wagers
  • Benjamin L. Ebert
  • Aviv Regev
  • First Published October 1, 2015

Corrigendum: MIPSTR: a method for multiplex genotyping of germline and somatic STR variation across many individuals

  • Keisha D. Carlson
  • Peter H. Sudmant
  • Maximilian O. Press
  • Evan E. Eichler
  • Jay Shendure
  • Christine Queitsch
  • First Published August 3, 2015
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