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Research

A quantitative framework for characterizing the evolutionary history of mammalian gene expression

Jenny Chen
Ross Swofford
Jeremy Johnson
Beryl B. Cummings
Noga Rogel
Kerstin Lindblad-Toh
Wilfried Haerty
Federica di Palma
Aviv Regev

First Published December 14, 2018

Research

ERAP2 transcripts under balancing selection" > Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection

Chun Jimmie Ye
Jenny Chen
Alexandra-Chloé Villani
Rachel E. Gate
Meena Subramaniam
Tushar Bhangale Mark N. Lee Towfique Raj Raktima Raychowdhury Weibo Li Noga Rogel Sean Simmons Selina H. Imboywa Portia I. Chipendo Cristin McCabe Michelle H. Lee Irene Y. Frohlich Barbara E. Stranger
... [+13 authors] ...,
Philip L. De Jager
Aviv Regev
Tim Behrens
Nir Hacohen

First Published November 16, 2018

Research

Single-cell RNA-seq reveals changes in cell cycle and differentiation programs upon aging of hematopoietic stem cells

Monika S. Kowalczyk
Itay Tirosh
Dirk Heckl
Tata Nageswara Rao
Atray Dixit
Brian J. Haas
... [+1 authors] ...,
Rebekka K. Schneider
Amy J. Wagers
Benjamin L. Ebert
Aviv Regev

First Published October 1, 2015

Method

Arboretum: Reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules

Sushmita Roy
Ilan Wapinski
Jenna Pfiffner
Courtney French
Amanda Socha
Jay Konieczka
... [+1 authors] ...,
Naomi Habib
Manolis Kellis
Dawn Thompson
Aviv Regev

First Published May 2, 2013

Resource

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

Andrea Pauli
Eivind Valen
Michael F. Lin
Manuel Garber
Nadine L. Vastenhouw
Joshua Z. Levin Lin Fan
... [+2 authors] ...,
Albin Sandelin
John L. Rinn
Aviv Regev
Alexander F. Schier

First Published November 22, 2011

Research

trans-regulated nucleosome positioning sequences reveals plastic rules for chromatin organization" > Evolutionary divergence of intrinsic and trans-regulated nucleosome positioning sequences reveals plastic rules for chromatin organization

Alex Tsankov
Yoshimi Yanagisawa
Nicholas Rhind
Aviv Regev
Oliver J. Rando

First Published September 13, 2011

Method

Digital transcriptome profiling from attomole-level RNA samples

Fatih Ozsolak
Alon Goren
Melissa Gymrek
Mitchell Guttman
Aviv Regev
Bradley E. Bernstein
Patrice M. Milos

First Published February 4, 2010

LETTER

Saccharomyces cerevisiae predicted ORFeome" > Revisiting the Saccharomyces cerevisiae predicted ORFeome

Qian-Ru Li
Anne-Ruxandra Carvunis
Haiyuan Yu
Jing-Dong J. Han
Quan Zhong
Nicolas Simonis Stanley Tam Tong Hao Niels J. Klitgord Denis Dupuy Danny Mou Ilan Wapinski
... [+7 authors] ...,
Aviv Regev
David E. Hill
Michael E. Cusick
Marc Vidal

First Published May 23, 2008