Research
Integrating short-read and long-read single-cell RNA sequencing for comprehensive transcriptome profiling in mouse retina
- First Published March 6, 2025
Method
Predicting unrecognized enhancer-mediated genome topology by an ensemble machine learning model
- First Published November 12, 2020
Resource
Assembly and analysis of 100 full MHC haplotypes from the Danish population
- First Published August 3, 2017
Research
SCRaMbLE generates designed combinatorial stochastic diversity in synthetic chromosomes
- First Published November 13, 2015
Method
Read clouds uncover variation in complex regions of the human genome
- First Published August 18, 2015
Research
Epigenetic modification and inheritance in sexual reversal of fish
- First Published February 2, 2014
Method
Discovery of recurrent structural variants in nasopharyngeal carcinoma
- First Published November 8, 2013
Research
The origin, evolution, and functional impact of short insertion–deletion variants identified in 179 human genomes
- First Published March 11, 2013
Resource
SOAPindel: Efficient identification of indels from short paired reads
- First Published September 12, 2012
Method
Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements
- First Published September 5, 2012
Resource
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
- First Published September 5, 2012
Research
The making of a new pathogen: Insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species
- First Published October 12, 2011
Research
The genome of the leaf-cutting ant Acromyrmex echinatior suggests key adaptations to advanced social life and fungus farming
- First Published June 30, 2011
Research
Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome
- First Published March 19, 2010
Letter
Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes
- First Published January 12, 2010
Resource
De novo assembly of human genomes with massively parallel short read sequencing
- First Published December 17, 2009
Resource
ProPhylER: A curated online resource for protein function and structure based on evolutionary constraint analyses
- First Published October 21, 2009
RESOURCE
The C. savignyi genetic map and its integration with the reference sequence facilitates insights into chordate genome evolution
- First Published June 2, 2008
LETTER
A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning
- First Published May 13, 2008
ARTICLE
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
- First Published June 13, 2007
ARTICLE
De novo discovery of a tissue-specific gene regulatory module in a chordate
- First Published September 16, 2005
LETTER
A microarray analysis of the rice transcriptome and its comparison to Arabidopsis
- First Published September 1, 2005
ARTICLE
Distribution and intensity of constraint in mammalian genomic sequence
- First Published June 17, 2005
Methods
Physicochemical constraint violation by missense substitutions mediates impairment of protein function and disease severity
- First Published June 17, 2005
LETTER
Noncoding regulatory sequences of Ciona exhibit strong correspondence between evolutionary constraint and functional importance
- First Published November 15, 2004
Methods
Automated Whole-Genome Multiple Alignment of Rat, Mouse, and Human
- First Published April 1, 2004
LETTER
Characterization of Evolutionary Rates and Constraints in Three Mammalian Genomes
- First Published April 1, 2004
LETTER
Quantitative Estimates of Sequence Divergence for Comparative Analyses of Mammalian Genomes
- First Published May 1, 2003
METHODS
LAGAN and Multi-LAGAN: Efficient Tools for Large-Scale Multiple Alignment of Genomic DNA
- First Published March 12, 2003
METHODS
RePS: A Sequence Assembler That Masks Exact Repeats Identified from the Shotgun Data
- First Published May 1, 2002
LETTER
Partitioning of Tissue Expression Accompanies Multiple Duplications of the Na+/K+ ATPase α Subunit Gene
- First Published September 20, 2001