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Research

Alu insertion variants alter gene transcript levels

  • Lindsay M. Payer
  • Jared P. Steranka
  • Maria S. Kryatova
  • Giacomo Grillo
  • Mathieu Lupien
  • Pedro P. Rocha
  • Kathleen H. Burns
  • First Published November 19, 2021
Method

Identifying clusters of cis-regulatory elements underpinning TAD structures and lineage-specific regulatory networks

  • Seyed Ali Madani Tonekaboni
  • Parisa Mazrooei
  • Victor Kofia
  • Benjamin Haibe-Kains
  • Mathieu Lupien
  • First Published September 18, 2019
Research

High-resolution structural genomics reveals new therapeutic vulnerabilities in glioblastoma

  • Michael J. Johnston
  • Ana Nikolic
  • Nicoletta Ninkovic
  • Paul Guilhamon
  • Florence M.G. Cavalli
  • Steven Seaman Franz J. Zemp John Lee Aly Abdelkareem Katrina Ellestad Alex Murison Michelle M. Kushida Fiona J. Coutinho Yussanne Ma Andrew J. Mungall Richard Moore Marco A. Marra Michael D. Taylor Peter B. Dirks Trevor J. Pugh Sorana Morrissy
  • ... [+16 authors] ...,
  • Bradley St Croix
  • Douglas J. Mahoney
  • Mathieu Lupien
  • Marco Gallo
  • First Published June 27, 2019
Research

Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion

  • James Hadfield
  • Simon R. Harris
  • Helena M.B. Seth-Smith
  • Surendra Parmar
  • Patiyan Andersson
  • Philip M. Giffard Julius Schachter Jeanne Moncada Louise Ellison María Lucía Gallo Vaulet Marcelo Rodríguez Fermepin Frans Radebe Suyapa Mendoza Sander Ouburg Servaas A. Morré Konrad Sachse Mirja Puolakkainen Suvi J. Korhonen Chris Sonnex Rebecca Wiggins Hamid Jalal Tamara Brunelli Patrizia Casprini Rachel Pitt Cathy Ison Alevtina Savicheva Elena Shipitsyna Ronza Hadad Laszlo Kari Matthew J. Burton David Mabey Anthony W. Solomon David Lewis Peter Marsh
  • ... [+29 authors] ...,
  • Magnus Unemo
  • Ian N. Clarke
  • Julian Parkhill
  • Nicholas R. Thomson
  • First Published June 6, 2017
Research

The logic of transcriptional regulator recruitment architecture at cis-regulatory modules controlling liver functions

  • Julie Dubois-Chevalier
  • Vanessa Dubois
  • Hélène Dehondt
  • Parisa Mazrooei
  • Claire Mazuy
  • Aurélien A. Sérandour Céline Gheeraert Penderia Guillaume Eric Baugé Bruno Derudas Nathalie Hennuyer Réjane Paumelle Guillemette Marot Jason S. Carroll
  • ... [+9 authors] ...,
  • Mathieu Lupien
  • Bart Staels
  • Philippe Lefebvre
  • Jérôme Eeckhoute
  • First Published April 11, 2017
Method

Read clouds uncover variation in complex regions of the human genome

  • Alex Bishara
  • Yuling Liu
  • Ziming Weng
  • Dorna Kashef-Haghighi
  • Daniel E. Newburger
  • Robert West
  • Arend Sidow
  • Serafim Batzoglou
  • First Published August 18, 2015
Method

Discovery of recurrent structural variants in nasopharyngeal carcinoma

  • Anton Valouev
  • Ziming Weng
  • Robert T. Sweeney
  • Sushama Varma
  • Quynh-Thu Le
  • Christina Kong
  • Arend Sidow
  • Robert B. West
  • First Published November 8, 2013
Research

Combinatorial effects of multiple enhancer variants in linkage disequilibrium dictate levels of gene expression to confer susceptibility to common traits

  • Olivia Corradin
  • Alina Saiakhova
  • Batool Akhtar-Zaidi
  • Lois Myeroff
  • Joseph Willis
  • Richard Cowper-Sal·lari
  • Mathieu Lupien
  • Sanford Markowitz
  • Peter C. Scacheri
  • First Published November 6, 2013
Research

Genome evolution during progression to breast cancer

  • Daniel E. Newburger
  • Dorna Kashef-Haghighi
  • Ziming Weng
  • Raheleh Salari
  • Robert T. Sweeney
  • Alayne L. Brunner Shirley X. Zhu Xiangqian Guo Sushama Varma
  • ... [+4 authors] ...,
  • Megan L. Troxell
  • Robert B. West
  • Serafim Batzoglou
  • Arend Sidow
  • First Published April 8, 2013
Method

Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture

  • Helena M.B. Seth-Smith
  • Simon R. Harris
  • Rachel J. Skilton
  • Frans M. Radebe
  • Daniel Golparian
  • Elena Shipitsyna Pham Thanh Duy Paul Scott Lesley T. Cutcliffe Colette O’Neill Surendra Parmar Rachel Pitt Stephen Baker Catherine A. Ison Peter Marsh Hamid Jalal David A. Lewis
  • ... [+12 authors] ...,
  • Magnus Unemo
  • Ian N. Clarke
  • Julian Parkhill
  • Nicholas R. Thomson
  • First Published March 22, 2013
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