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In memoriam

C. Thomas Caskey (1938–2022)

  • Richard A. Gibbs
  • Aravinda Chakravarti
  • Evan E. Eichler
  • Eric D. Green
  • Richard M. Myers
  • Anne C. Ferguson-Smith
  • Kateryna D. Makova
  • Hillary E. Sussman
  • First Published February 17, 2022
In memoriam

Deborah A. Nickerson (1954 –2021)

  • Aravinda Chakravarti
  • Evan E. Eichler
  • Richard A. Gibbs
  • Eric D. Green
  • Richard M. Myers
  • Hillary E. Sussman
  • First Published January 24, 2022
Research

RET regulatory code is disrupted in Hirschsprung disease" > A multi-enhancer RET regulatory code is disrupted in Hirschsprung disease

  • Sumantra Chatterjee
  • Kameko M. Karasaki
  • Lauren E. Fries
  • Ashish Kapoor
  • Aravinda Chakravarti
  • First Published November 15, 2021
Method

Sequence-based correction of barcode bias in massively parallel reporter assays

  • Dongwon Lee
  • Ashish Kapoor
  • Changhee Lee
  • Michael Mudgett
  • Michael A. Beer
  • Aravinda Chakravarti
  • First Published July 20, 2021
Research

Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing

  • Sergey Aganezov
  • Sara Goodwin
  • Rachel M. Sherman
  • Fritz J. Sedlazeck
  • Gayatri Arun
  • Sonam Bhatia Isac Lee Melanie Kirsche Robert Wappel Melissa Kramer Karen Kostroff
  • ... [+6 authors] ...,
  • David L. Spector
  • Winston Timp
  • W. Richard McCombie
  • Michael C. Schatz
  • First Published September 4, 2020
Method

cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants" > Human cardiac cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants

  • Dongwon Lee
  • Ashish Kapoor
  • Alexias Safi
  • Lingyun Song
  • Marc K. Halushka
  • Gregory E. Crawford
  • Aravinda Chakravarti
  • First Published August 23, 2018
Research

Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line

  • Maria Nattestad
  • Sara Goodwin
  • Karen Ng
  • Timour Baslan
  • Fritz J. Sedlazeck
  • Philipp Rescheneder Tyler Garvin Han Fang James Gurtowski Elizabeth Hutton Elizabeth Tseng Chen-Shan Chin Timothy Beck Yogi Sundaravadanam Melissa Kramer Eric Antoniou
  • ... [+11 authors] ...,
  • John D. McPherson
  • James Hicks
  • W. Richard McCombie
  • Michael C. Schatz
  • First Published June 28, 2018
Resource

A comparative transcriptional landscape of maize and sorghum obtained by single-molecule sequencing

  • Bo Wang
  • Michael Regulski
  • Elizabeth Tseng
  • Andrew Olson
  • Sara Goodwin
  • W. Richard McCombie
  • Doreen Ware
  • First Published April 30, 2018
Method

Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome

  • Sara Goodwin
  • James Gurtowski
  • Scott Ethe-Sayers
  • Panchajanya Deshpande
  • Michael C. Schatz
  • W. Richard McCombie
  • First Published October 7, 2015
Research

The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA

  • Michael Regulski
  • Zhenyuan Lu
  • Jude Kendall
  • Mark T.A. Donoghue
  • Jon Reinders
  • Victor Llaca Stephane Deschamps Andrew Smith Dan Levy W. Richard McCombie Scott Tingey
  • ... [+6 authors] ...,
  • Antoni Rafalski
  • James Hicks
  • Doreen Ware
  • Robert A. Martienssen
  • First Published June 5, 2013
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