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In memoriam

C. Thomas Caskey (1938–2022)

  • Richard A. Gibbs
  • Aravinda Chakravarti
  • Evan E. Eichler
  • Eric D. Green
  • Richard M. Myers
  • Anne C. Ferguson-Smith
  • Kateryna D. Makova
  • Hillary E. Sussman
  • First Published February 17, 2022
In memoriam

Deborah A. Nickerson (1954 –2021)

  • Aravinda Chakravarti
  • Evan E. Eichler
  • Richard A. Gibbs
  • Eric D. Green
  • Richard M. Myers
  • Hillary E. Sussman
  • First Published January 24, 2022
Research

RET regulatory code is disrupted in Hirschsprung disease" > A multi-enhancer RET regulatory code is disrupted in Hirschsprung disease

  • Sumantra Chatterjee
  • Kameko M. Karasaki
  • Lauren E. Fries
  • Ashish Kapoor
  • Aravinda Chakravarti
  • First Published November 15, 2021
Method

Sequence-based correction of barcode bias in massively parallel reporter assays

  • Dongwon Lee
  • Ashish Kapoor
  • Changhee Lee
  • Michael Mudgett
  • Michael A. Beer
  • Aravinda Chakravarti
  • First Published July 20, 2021
Research

PRDM9 expression impacts the pan-cancer genomic landscape" > Aberrant PRDM9 expression impacts the pan-cancer genomic landscape

  • Armande Ang Houle
  • Heather Gibling
  • Fabien C. Lamaze
  • Hilary A. Edgington
  • David Soave
  • Marie-Julie Fave
  • ... [+1 authors] ...,
  • Mawusse Agbessi
  • Vanessa Bruat
  • Lincoln D. Stein
  • Philip Awadalla
  • First Published October 19, 2018
Method

cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants" > Human cardiac cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants

  • Dongwon Lee
  • Ashish Kapoor
  • Alexias Safi
  • Lingyun Song
  • Marc K. Halushka
  • Gregory E. Crawford
  • Aravinda Chakravarti
  • First Published August 23, 2018
Research

Caenorhabditis" > Full-genome evolutionary histories of selfing, splitting, and selection in Caenorhabditis

  • Cristel G. Thomas
  • Wei Wang
  • Richard Jovelin
  • Rajarshi Ghosh
  • Tatiana Lomasko
  • Quang Trinh
  • Leonid Kruglyak
  • Lincoln D. Stein
  • Asher D. Cutter
  • First Published March 17, 2015
Insight/Outlook

Genomic contributions to Mendelian disease

  • Aravinda Chakravarti
  • First Published May 2, 2011
Resource

JBrowse: A next-generation genome browser

  • Mitchell E. Skinner
  • Andrew V. Uzilov
  • Lincoln D. Stein
  • Christopher J. Mungall
  • Ian H. Holmes
  • First Published July 1, 2009
LETTER

Human embryonic stem cells have a unique epigenetic signature

  • Marina Bibikova
  • Eugene Chudin
  • Bonnie Wu
  • Lixin Zhou
  • Eliza Wickham Garcia
  • Ying Liu Soojung Shin Todd W. Plaia Jonathan M. Auerbach Dan E. Arking Rodolfo Gonzalez Jeremy Crook Bruce Davidson Thomas C. Schulz Allan Robins Aparna Khanna Peter Sartipy Johan Hyllner Padmavathy Vanguri Smita Savant-Bhonsale Alan K. Smith Aravinda Chakravarti Anirban Maitra
  • ... [+18 authors] ...,
  • Mahendra Rao
  • David L. Barker
  • Jeanne F. Loring
  • Jian-Bing Fan
  • First Published August 9, 2006
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