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In memoriam

Jim Watson (1928–2025): a genomics visionary

Aravinda Chakravarti
Evan E. Eichler
Anne C. Ferguson-Smith
Richard A. Gibbs
Eric D. Green
John R. Inglis
Kateryna D. Makova
Richard M. Myers
Hillary E. Sussman

First Published July 23, 2026

In memoriam

C. Thomas Caskey (1938–2022)

Richard A. Gibbs
Aravinda Chakravarti
Evan E. Eichler
Eric D. Green
Richard M. Myers
Anne C. Ferguson-Smith
Kateryna D. Makova
Hillary E. Sussman

First Published February 17, 2022

In memoriam

Deborah A. Nickerson (1954 –2021)

Aravinda Chakravarti
Evan E. Eichler
Richard A. Gibbs
Eric D. Green
Richard M. Myers
Hillary E. Sussman

First Published January 24, 2022

Research

RET regulatory code is disrupted in Hirschsprung disease" > A multi-enhancer RET regulatory code is disrupted in Hirschsprung disease

Sumantra Chatterjee
Kameko M. Karasaki
Lauren E. Fries
Ashish Kapoor
Aravinda Chakravarti

First Published November 15, 2021

Method

Sequence-based correction of barcode bias in massively parallel reporter assays

Dongwon Lee
Ashish Kapoor
Changhee Lee
Michael Mudgett
Michael A. Beer
Aravinda Chakravarti

First Published July 20, 2021

Method

cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants" > Human cardiac cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants

Dongwon Lee
Ashish Kapoor
Alexias Safi
Lingyun Song
Marc K. Halushka
Gregory E. Crawford
Aravinda Chakravarti

First Published August 23, 2018

Research

Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line

Maria Nattestad
Sara Goodwin
Karen Ng
Timour Baslan
Fritz J. Sedlazeck
Philipp Rescheneder Tyler Garvin Han Fang James Gurtowski Elizabeth Hutton Elizabeth Tseng Chen-Shan Chin Timothy Beck Yogi Sundaravadanam Melissa Kramer Eric Antoniou
... [+11 authors] ...,
John D. McPherson
James Hicks
W. Richard McCombie
Michael C. Schatz

First Published June 28, 2018

Method

Optimizing sparse sequencing of single cells for highly multiplex copy number profiling

Timour Baslan
Jude Kendall
Brian Ward
Hilary Cox
Anthony Leotta
Linda Rodgers Michael Riggs Sean D'Italia Guoli Sun Mao Yong Kristy Miskimen Hannah Gilmore Michael Saborowski Nevenka Dimitrova
... [+9 authors] ...,
Alexander Krasnitz
Lyndsay Harris
Michael Wigler
James Hicks

First Published April 9, 2015

Research

The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA

Michael Regulski
Zhenyuan Lu
Jude Kendall
Mark T.A. Donoghue
Jon Reinders
Victor Llaca Stephane Deschamps Andrew Smith Dan Levy W. Richard McCombie Scott Tingey
... [+6 authors] ...,
Antoni Rafalski
James Hicks
Doreen Ware
Robert A. Martienssen

First Published June 5, 2013

Insight/Outlook

Genomic contributions to Mendelian disease

Aravinda Chakravarti

First Published May 2, 2011

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