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In memoriam

C. Thomas Caskey (1938–2022)

  • Richard A. Gibbs
  • Aravinda Chakravarti
  • Evan E. Eichler
  • Eric D. Green
  • Richard M. Myers
  • Anne C. Ferguson-Smith
  • Kateryna D. Makova
  • Hillary E. Sussman
  • First Published February 17, 2022
In memoriam

Deborah A. Nickerson (1954 –2021)

  • Aravinda Chakravarti
  • Evan E. Eichler
  • Richard A. Gibbs
  • Eric D. Green
  • Richard M. Myers
  • Hillary E. Sussman
  • First Published January 24, 2022
Research

RET regulatory code is disrupted in Hirschsprung disease" > A multi-enhancer RET regulatory code is disrupted in Hirschsprung disease

  • Sumantra Chatterjee
  • Kameko M. Karasaki
  • Lauren E. Fries
  • Ashish Kapoor
  • Aravinda Chakravarti
  • First Published November 15, 2021
Method

Sequence-based correction of barcode bias in massively parallel reporter assays

  • Dongwon Lee
  • Ashish Kapoor
  • Changhee Lee
  • Michael Mudgett
  • Michael A. Beer
  • Aravinda Chakravarti
  • First Published July 20, 2021
Method

cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants" > Human cardiac cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants

  • Dongwon Lee
  • Ashish Kapoor
  • Alexias Safi
  • Lingyun Song
  • Marc K. Halushka
  • Gregory E. Crawford
  • Aravinda Chakravarti
  • First Published August 23, 2018
Resource

A DNA methylation fingerprint of 1628 human samples

  • Agustin F. Fernandez
  • Yassen Assenov
  • Jose Ignacio Martin-Subero
  • Balazs Balint
  • Reiner Siebert
  • Hiroaki Taniguchi Hiroyuki Yamamoto Manuel Hidalgo Aik-Choon Tan Oliver Galm Isidre Ferrer Montse Sanchez-Cespedes Alberto Villanueva Javier Carmona Jose V. Sanchez-Mut Maria Berdasco Victor Moreno Gabriel Capella David Monk Esteban Ballestar Santiago Ropero Ramon Martinez Marta Sanchez-Carbayo Felipe Prosper Xabier Agirre Mario F. Fraga Osvaldo Graña Luis Perez-Jurado Jaume Mora Susana Puig Jaime Prat Lina Badimon Annibale A. Puca Stephen J. Meltzer
  • ... [+29 authors] ...,
  • Thomas Lengauer
  • John Bridgewater
  • Christoph Bock
  • Manel Esteller
  • First Published May 25, 2011
Insight/Outlook

Genomic contributions to Mendelian disease

  • Aravinda Chakravarti
  • First Published May 2, 2011
Letter

The dynamic DNA methylomes of double-stranded DNA viruses associated with human cancer

  • Agustin F. Fernandez
  • Cecilia Rosales
  • Pilar Lopez-Nieva
  • Osvaldo Graña
  • Esteban Ballestar
  • Santiago Ropero Jesus Espada Sonia A. Melo Amaia Lujambio Mario F. Fraga Irene Pino Biola Javierre Francisco J. Carmona Francesco Acquadro Renske D.M. Steenbergen Peter J.F. Snijders Chris J. Meijer Pascal Pineau Anne Dejean Belen Lloveras Gabriel Capella Josep Quer Maria Buti Juan-Ignacio Esteban Helena Allende Francisco Rodriguez-Frias Xavier Castellsague Janos Minarovits Jordi Ponce Daniela Capello Gianluca Gaidano Juan Cruz Cigudosa Gonzalo Gomez-Lopez David G. Pisano Alfonso Valencia Miguel Angel Piris
  • ... [+31 authors] ...,
  • Francesc X. Bosch
  • Ellen Cahir-McFarland
  • Elliott Kieff
  • Manel Esteller
  • First Published February 10, 2009
LETTER

Human embryonic stem cells have a unique epigenetic signature

  • Marina Bibikova
  • Eugene Chudin
  • Bonnie Wu
  • Lixin Zhou
  • Eliza Wickham Garcia
  • Ying Liu Soojung Shin Todd W. Plaia Jonathan M. Auerbach Dan E. Arking Rodolfo Gonzalez Jeremy Crook Bruce Davidson Thomas C. Schulz Allan Robins Aparna Khanna Peter Sartipy Johan Hyllner Padmavathy Vanguri Smita Savant-Bhonsale Alan K. Smith Aravinda Chakravarti Anirban Maitra
  • ... [+18 authors] ...,
  • Mahendra Rao
  • David L. Barker
  • Jeanne F. Loring
  • Jian-Bing Fan
  • First Published August 9, 2006
Methods

On the probability that a novel variant is a disease-causing mutation

  • Adele A. Mitchell
  • Aravinda Chakravarti
  • David J. Cutler
  • First Published June 17, 2005
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