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In memoriam

C. Thomas Caskey (1938–2022)

  • Richard A. Gibbs
  • Aravinda Chakravarti
  • Evan E. Eichler
  • Eric D. Green
  • Richard M. Myers
  • Anne C. Ferguson-Smith
  • Kateryna D. Makova
  • Hillary E. Sussman
  • First Published February 17, 2022
In memoriam

Deborah A. Nickerson (1954 –2021)

  • Aravinda Chakravarti
  • Evan E. Eichler
  • Richard A. Gibbs
  • Eric D. Green
  • Richard M. Myers
  • Hillary E. Sussman
  • First Published January 24, 2022
Research

RET regulatory code is disrupted in Hirschsprung disease" > A multi-enhancer RET regulatory code is disrupted in Hirschsprung disease

  • Sumantra Chatterjee
  • Kameko M. Karasaki
  • Lauren E. Fries
  • Ashish Kapoor
  • Aravinda Chakravarti
  • First Published November 15, 2021
Method

Sequence-based correction of barcode bias in massively parallel reporter assays

  • Dongwon Lee
  • Ashish Kapoor
  • Changhee Lee
  • Michael Mudgett
  • Michael A. Beer
  • Aravinda Chakravarti
  • First Published July 20, 2021
Method

cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants" > Human cardiac cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants

  • Dongwon Lee
  • Ashish Kapoor
  • Alexias Safi
  • Lingyun Song
  • Marc K. Halushka
  • Gregory E. Crawford
  • Aravinda Chakravarti
  • First Published August 23, 2018
Insight/Outlook

Genomic contributions to Mendelian disease

  • Aravinda Chakravarti
  • First Published May 2, 2011
Methods

Mapping of transcription factor binding regions in mammalian cells by ChIP: Comparison of array- and sequencing-based technologies

  • Ghia M. Euskirchen
  • Joel S. Rozowsky
  • Chia-Lin Wei
  • Wah Heng Lee
  • Zhengdong D. Zhang
  • Stephen Hartman Olof Emanuelsson Viktor Stolc
  • ... [+3 authors] ...,
  • Sherman Weissman
  • Mark B. Gerstein
  • Yijun Ruan
  • Michael Snyder
  • First Published June 13, 2007
PERSPECTIVE

What is a gene, post-ENCODE? History and updated definition

  • Mark B. Gerstein
  • Can Bruce
  • Joel S. Rozowsky
  • Deyou Zheng
  • Jiang Du
  • Jan O. Korbel
  • ... [+1 authors] ...,
  • Olof Emanuelsson
  • Zhengdong D. Zhang
  • Sherman Weissman
  • Michael Snyder
  • First Published June 13, 2007
Methods

Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome

  • Olof Emanuelsson
  • Ugrappa Nagalakshmi
  • Deyou Zheng
  • Joel S. Rozowsky
  • Alexander E. Urban
  • Jiang Du Zheng Lian
  • ... [+2 authors] ...,
  • Viktor Stolc
  • Sherman Weissman
  • Michael Snyder
  • Mark B. Gerstein
  • First Published November 21, 2006
LETTER

Human embryonic stem cells have a unique epigenetic signature

  • Marina Bibikova
  • Eugene Chudin
  • Bonnie Wu
  • Lixin Zhou
  • Eliza Wickham Garcia
  • Ying Liu Soojung Shin Todd W. Plaia Jonathan M. Auerbach Dan E. Arking Rodolfo Gonzalez Jeremy Crook Bruce Davidson Thomas C. Schulz Allan Robins Aparna Khanna Peter Sartipy Johan Hyllner Padmavathy Vanguri Smita Savant-Bhonsale Alan K. Smith Aravinda Chakravarti Anirban Maitra
  • ... [+18 authors] ...,
  • Mahendra Rao
  • David L. Barker
  • Jeanne F. Loring
  • Jian-Bing Fan
  • First Published August 9, 2006
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