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Method

De novo antibody identification in human blood from full-length single B cell transcriptomics and matching haplotype-resolved germline assemblies

  • John Beaulaurier
  • Lynn Ly
  • J. Andrew Duty
  • Carly Tyer
  • Christian Stevens
  • Chuan-Tien Hung Akash Sookdeo Alex W. Drong Shreyas Kowdle Axel Guzman-Solis Domenico Tortorella
  • ... [+6 authors] ...,
  • Daniel J. Turner
  • Sissel Juul
  • Scott Hickey
  • Benhur Lee
  • First Published March 21, 2025
Method

Phased nanopore assembly with Shasta and modular graph phasing with GFAse

  • Ryan Lorig-Roach
  • Melissa Meredith
  • Jean Monlong
  • Miten Jain
  • Hugh E. Olsen
  • Brandy McNulty David Porubsky Tessa G. Montague Julian K. Lucas Chris Condon Jordan M. Eizenga Sissel Juul Sean K. McKenzie Sara E. Simmonds Jimin Park Mobin Asri Sergey Koren Evan E. Eichler Richard Axel
  • ... [+14 authors] ...,
  • Bruce Martin
  • Paolo Carnevali
  • Karen H. Miga
  • Benedict Paten
  • First Published April 16, 2024
In memoriam

C. Thomas Caskey (1938–2022)

  • Richard A. Gibbs
  • Aravinda Chakravarti
  • Evan E. Eichler
  • Eric D. Green
  • Richard M. Myers
  • Anne C. Ferguson-Smith
  • Kateryna D. Makova
  • Hillary E. Sussman
  • First Published February 17, 2022
In memoriam

Deborah A. Nickerson (1954 –2021)

  • Aravinda Chakravarti
  • Evan E. Eichler
  • Richard A. Gibbs
  • Eric D. Green
  • Richard M. Myers
  • Hillary E. Sussman
  • First Published January 24, 2022
Research

RET regulatory code is disrupted in Hirschsprung disease" > A multi-enhancer RET regulatory code is disrupted in Hirschsprung disease

  • Sumantra Chatterjee
  • Kameko M. Karasaki
  • Lauren E. Fries
  • Ashish Kapoor
  • Aravinda Chakravarti
  • First Published November 15, 2021
Method

Sequence-based correction of barcode bias in massively parallel reporter assays

  • Dongwon Lee
  • Ashish Kapoor
  • Changhee Lee
  • Michael Mudgett
  • Michael A. Beer
  • Aravinda Chakravarti
  • First Published July 20, 2021
Method

Assembly-free single-molecule sequencing recovers complete virus genomes from natural microbial communities

  • John Beaulaurier
  • Elaine Luo
  • John M. Eppley
  • Paul Den Uyl
  • Xiaoguang Dai
  • Andrew Burger Daniel J. Turner
  • ... [+2 authors] ...,
  • Matthew Pendelton
  • Sissel Juul
  • Eoghan Harrington
  • Edward F. DeLong
  • First Published February 19, 2020
Method

cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants" > Human cardiac cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants

  • Dongwon Lee
  • Ashish Kapoor
  • Alexias Safi
  • Lingyun Song
  • Marc K. Halushka
  • Gregory E. Crawford
  • Aravinda Chakravarti
  • First Published August 23, 2018
Corrigendum

Corrigendum: Extensive microRNA-mediated crosstalk between lncRNAs and mRNAs in mouse embryonic stem cells

  • Jennifer Y. Tan
  • Tamara Sirey
  • Frantisek Honti
  • Bryony Graham
  • Allison Piovesan
  • Matthias Merkenschlager
  • Caleb Webber
  • Chris P. Ponting
  • Ana C. Marques
  • First Published September 1, 2015
Research

Extensive microRNA-mediated crosstalk between lncRNAs and mRNAs in mouse embryonic stem cells

  • Jennifer Y. Tan
  • Tamara Sirey
  • Frantisek Honti
  • Bryony Graham
  • Allison Piovesan
  • Matthias Merkenschlager
  • Caleb Webber
  • Chris P. Ponting
  • Ana C. Marques
  • First Published March 19, 2015
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