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ONT_LB_GRRNA_RealTime

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An integrative TAD catalog in lymphoblastoid cell lines discloses the functional impact of deletions and insertions in human genomes

Chong Li
Marc Jan Bonder
Sabriya Syed
Matthew Jensen
Mark B. Gerstein
Michael C. Zody Mark J.P. Chaisson Michael E. Talkowski Tobias Marschall
... [+4 authors] ...,
Jan O. Korbel
Evan E. Eichler
Charles Lee
Xinghua Shi

First Published December 5, 2024

Bacteriovorax bacteria" > The chromatin landscape of the histone-possessing Bacteriovorax bacteria

Georgi K. Marinov
Benjamin Doughty
Anshul Kundaje
William J. Greenleaf

First Published November 21, 2024

Assessing and mitigating privacy risks of sparse, noisy genotypes by local alignment to haplotype databases

Prashant S. Emani
Maya N. Geradi
Gamze Gürsoy
Monica R. Grasty
Andrew Miranker
Mark B. Gerstein

First Published December 14, 2023

Domain-adaptive neural networks improve cross-species prediction of transcription factor binding

Kelly Cochran
Divyanshi Srivastava
Avanti Shrikumar
Akshay Balsubramani
Ross C. Hardison
Anshul Kundaje
Shaun Mahony

First Published January 18, 2022

Corrigendum: Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution

Amit Blumberg
Edward J. Rice
Anshul Kundaje
Charles G. Danko
Dan Mishmar

First Published April 1, 2019

Remodeling of epigenome and transcriptome landscapes with aging in mice reveals widespread induction of inflammatory responses

Bérénice A. Benayoun
Elizabeth A. Pollina
Param Priya Singh
Salah Mahmoudi
Itamar Harel
Kerriann M. Casey
Ben W. Dulken
Anshul Kundaje
Anne Brunet

First Published March 11, 2019

A common pattern of DNase I footprinting throughout the human mtDNA unveils clues for a chromatin-like organization

Amit Blumberg
Charles G. Danko
Anshul Kundaje
Dan Mishmar

First Published July 12, 2018

Impact of regulatory variation across human iPSCs and differentiated cells

Nicholas E. Banovich
Yang I. Li
Anil Raj
Michelle C. Ward
Peyton Greenside
Diego Calderon Po Yuan Tung Jonathan E. Burnett Marsha Myrthil Samantha M. Thomas Courtney K. Burrows Irene Gallego Romero
... [+7 authors] ...,
Bryan J. Pavlovic
Anshul Kundaje
Jonathan K. Pritchard
Yoav Gilad

First Published December 5, 2017

C. elegans" > Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans

Aaron C. Daugherty
Robin W. Yeo
Jason D. Buenrostro
William J. Greenleaf
Anshul Kundaje
Anne Brunet

First Published November 15, 2017

Dynamic RNA–protein interactions underlie the zebrafish maternal-to-zygotic transition

Vladimir Despic
Mario Dejung
Mengting Gu
Jayanth Krishnan
Jing Zhang
Lydia Herzel
... [+1 authors] ...,
Korinna Straube
Mark B. Gerstein
Falk Butter
Karla M. Neugebauer

First Published April 5, 2017

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