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Bacteriovorax bacteria" > The chromatin landscape of the histone-possessing Bacteriovorax bacteria

  • Georgi K. Marinov
  • Benjamin Doughty
  • Anshul Kundaje
  • William J. Greenleaf
  • First Published November 21, 2024

Profiling the quantitative occupancy of myriad transcription factors across conditions by modeling chromatin accessibility data

  • Kaixuan Luo
  • Jianling Zhong
  • Alexias Safi
  • Linda K. Hong
  • Alok K. Tewari
  • Lingyun Song
  • ... [+1 authors] ...,
  • Timothy E. Reddy
  • Li Ma
  • Gregory E. Crawford
  • Alexander J. Hartemink
  • First Published May 24, 2022

Domain-adaptive neural networks improve cross-species prediction of transcription factor binding

  • Kelly Cochran
  • Divyanshi Srivastava
  • Avanti Shrikumar
  • Akshay Balsubramani
  • Ross C. Hardison
  • Anshul Kundaje
  • Shaun Mahony
  • First Published January 18, 2022

Corrigendum: Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution

  • Amit Blumberg
  • Edward J. Rice
  • Anshul Kundaje
  • Charles G. Danko
  • Dan Mishmar
  • First Published April 1, 2019

Remodeling of epigenome and transcriptome landscapes with aging in mice reveals widespread induction of inflammatory responses

  • Bérénice A. Benayoun
  • Elizabeth A. Pollina
  • Param Priya Singh
  • Salah Mahmoudi
  • Itamar Harel
  • Kerriann M. Casey
  • Ben W. Dulken
  • Anshul Kundaje
  • Anne Brunet
  • First Published March 11, 2019

cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants" > Human cardiac cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants

  • Dongwon Lee
  • Ashish Kapoor
  • Alexias Safi
  • Lingyun Song
  • Marc K. Halushka
  • Gregory E. Crawford
  • Aravinda Chakravarti
  • First Published August 23, 2018

Glucocorticoid receptor recruits to enhancers and drives activation by motif-directed binding

  • Ian C. McDowell
  • Alejandro Barrera
  • Anthony M. D'Ippolito
  • Christopher M. Vockley
  • Linda K. Hong
  • Sarah M. Leichter Luke C. Bartelt William H. Majoros Lingyun Song Alexias Safi D. Dewran Koçak Charles A. Gersbach
  • ... [+7 authors] ...,
  • Alexander J. Hartemink
  • Gregory E. Crawford
  • Barbara E. Engelhardt
  • Timothy E. Reddy
  • First Published August 10, 2018

A common pattern of DNase I footprinting throughout the human mtDNA unveils clues for a chromatin-like organization

  • Amit Blumberg
  • Charles G. Danko
  • Anshul Kundaje
  • Dan Mishmar
  • First Published July 12, 2018

Impact of regulatory variation across human iPSCs and differentiated cells

  • Nicholas E. Banovich
  • Yang I. Li
  • Anil Raj
  • Michelle C. Ward
  • Peyton Greenside
  • Diego Calderon Po Yuan Tung Jonathan E. Burnett Marsha Myrthil Samantha M. Thomas Courtney K. Burrows Irene Gallego Romero
  • ... [+7 authors] ...,
  • Bryan J. Pavlovic
  • Anshul Kundaje
  • Jonathan K. Pritchard
  • Yoav Gilad
  • First Published December 5, 2017

Corrigendum: Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal

  • Juan L. Mateo
  • Debbie L.C. van den Berg
  • Maximilian Haeussler
  • Daniela Drechsel
  • Zachary B. Gaber
  • Diogo S. Castro Paul Robson Q. Richard Lu Gregory E. Crawford Paul Flicek
  • ... [+5 authors] ...,
  • Laurence Ettwiller
  • Joachim Wittbrodt
  • François Guillemot
  • Ben Martynoga
  • First Published December 1, 2017
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