Search | Genome Research

3C sites in poly(A) RNA" > Nanopore direct RNA sequencing reveals METTL2A-mediated m³C sites in poly(A) RNA

Shuhei Mitsutomi
Anzu Sugawara
Masahide Seki
Yutaka Suzuki
Sotaro Miyao
Haozhe Du
... [+1 authors] ...,
Kenji Takahashi
Yusuke Mizukami
Kenzui Taniue
Nobuyoshi Akimitsu

First Published October 30, 2025

Positive selective sweeps of epigenetic mutations regulating specialized metabolites in plants

Kazumasa Shirai
Mitsuhiko P. Sato
Ranko Nishi
Masahide Seki
Yutaka Suzuki
Kousuke Hanada

First Published May 18, 2021

Long-read sequencing for non-small-cell lung cancer genomes

Yoshitaka Sakamoto
Liu Xu
Masahide Seki
Toshiyuki T. Yokoyama
Masahiro Kasahara
Yukie Kashima Akihiro Ohashi Yoko Shimada Noriko Motoi Katsuya Tsuchihara Susumu S. Kobayashi
... [+6 authors] ...,
Takashi Kohno
Yuichi Shiraishi
Ayako Suzuki
Yutaka Suzuki

First Published September 4, 2020

Metabolic labeling of RNA using multiple ribonucleoside analogs enables the simultaneous evaluation of RNA synthesis and degradation rates

Kentaro Kawata
Hiroyasu Wakida
Toshimichi Yamada
Kenzui Taniue
Han Han
Masahide Seki
Yutaka Suzuki
Nobuyoshi Akimitsu

First Published August 25, 2020

Plasmodium falciparum" > Corrigendum: Interactive transcriptome analysis of malaria patients and infecting Plasmodium falciparum

Junya Yamagishi
Anna Natori
Mohammed E.M. Tolba
Arthur E. Mongan
Chihiro Sugimoto
Toshiaki Katayama Shuichi Kawashima Wojciech Makalowski
... [+3 authors] ...,
Ryuichiro Maeda
Yuki Eshita
Josef Tuda
Yutaka Suzuki

First Published August 1, 2018

Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes

Vedran Franke
Sravya Ganesh
Rosa Karlic
Radek Malik
Josef Pasulka
Filip Horvat Maja Kuzman Helena Fulka Marketa Cernohorska Jana Urbanova Eliska Svobodova Jun Ma Yutaka Suzuki
... [+8 authors] ...,
Fugaku Aoki
Richard M. Schultz
Kristian Vlahovicek
Petr Svoboda

First Published May 18, 2017

A GC-rich sequence feature in the 3′ UTR directs UPF1-dependent mRNA decay in mammalian cells

Naoto Imamachi
Kazi Abdus Salam
Yutaka Suzuki
Nobuyoshi Akimitsu

First Published December 9, 2016

Ciona intestinalis" > Genome-wide identification and characterization of transcription start sites and promoters in the tunicate Ciona intestinalis

Rui Yokomori
Kotaro Shimai
Koki Nishitsuji
Yutaka Suzuki
Takehiro G. Kusakabe
Kenta Nakai

First Published December 14, 2015

Plasmodium falciparum" > Interactive transcriptome analysis of malaria patients and infecting Plasmodium falciparum

Junya Yamagishi
Anna Natori
Mohammed E.M. Tolba
Arthur E. Mongan
Chihiro Sugimoto
Toshiaki Katayama Shuichi Kawashima Wojciech Makalowski
... [+3 authors] ...,
Ryuichiro Maeda
Yuki Eshita
Josef Tuda
Yutaka Suzuki

First Published August 4, 2014

Coelacanth genomes reveal signatures for evolutionary transition from water to land

Masato Nikaido
Hideki Noguchi
Hidenori Nishihara
Atsushi Toyoda
Yutaka Suzuki
Rei Kajitani Hikoyu Suzuki Miki Okuno Mitsuto Aibara Benjamin P. Ngatunga Semvua I. Mzighani Hassan W.J. Kalombo Kawilarang W.A. Masengi Josef Tuda Sadao Nogami Ryuichiro Maeda Masamitsu Iwata Yoshitaka Abe Koji Fujimura Masataka Okabe Takanori Amano Akiteru Maeno Toshihiko Shiroishi Takehiko Itoh
... [+19 authors] ...,
Sumio Sugano
Yuji Kohara
Asao Fujiyama
Norihiro Okada

First Published July 22, 2013

High-resolution DNA methylome analysis of primordial germ cells identifies gender-specific reprogramming in mice

Hisato Kobayashi
Takayuki Sakurai
Fumihito Miura
Misaki Imai
Kentaro Mochiduki
Eikichi Yanagisawa Akihiko Sakashita Takuya Wakai
... [+3 authors] ...,
Yutaka Suzuki
Takashi Ito
Yasuhisa Matsui
Tomohiro Kono

First Published February 14, 2013

Genome-wide genetic variations are highly correlated with proximal DNA methylation patterns

Wei Qu
Shin-ichi Hashimoto
Atsuko Shimada
Yoichiro Nakatani
Kazuki Ichikawa
Taro L. Saito Katsumi Ogoshi Kouji Matsushima
... [+3 authors] ...,
Yutaka Suzuki
Sumio Sugano
Hiroyuki Takeda
Shinichi Morishita

First Published June 11, 2012

Genome-wide determination of RNA stability reveals hundreds of short-lived noncoding transcripts in mammals

Hidenori Tani
Rena Mizutani
Kazi Abdus Salam
Keiko Tano
Kenichi Ijiri
Ai Wakamatsu
Takao Isogai
Yutaka Suzuki
Nobuyoshi Akimitsu

First Published February 27, 2012

Comparative RNA sequencing reveals substantial genetic variation in endangered primates

George H. Perry
Páll Melsted
John C. Marioni
Ying Wang
Russell Bainer
Joseph K. Pickrell Katelyn Michelini Sarah Zehr
... [+3 authors] ...,
Anne D. Yoder
Matthew Stephens
Jonathan K. Pritchard
Yoav Gilad

First Published December 29, 2011

Genome-wide characterization of transcriptional start sites in humans by integrative transcriptome analysis

Riu Yamashita
Nuankanya P. Sathira
Akinori Kanai
Kousuke Tanimoto
Takako Arauchi
Yoshiaki Tanaka
... [+1 authors] ...,
Shin-ichi Hashimoto
Sumio Sugano
Kenta Nakai
Yutaka Suzuki

First Published March 3, 2011

Nucleotide composition-linked divergence of vertebrate core promoter architecture

Simon J. van Heeringen
Waseem Akhtar
Ulrike G. Jacobi
Robert C. Akkers
Yutaka Suzuki
Gert Jan C. Veenstra

First Published January 10, 2011

Development and application of a phylogenomic toolkit: Resolving the evolutionary history of Madagascar’s lemurs

Julie E. Horvath
David W. Weisrock
Stephanie L. Embry
Isabella Fiorentino
James P. Balhoff
Peter Kappeler
Gregory A. Wray
Huntington F. Willard
Anne D. Yoder

First Published February 1, 2008

Distinct class of putative “non-conserved” promoters in humans: Comparative studies of alternative promoters of human and mouse genes

Katsuki Tsuritani
Takuma Irie
Riu Yamashita
Yuta Sakakibara
Hiroyuki Wakaguri
Akinori Kanai
... [+1 authors] ...,
Junko Mizushima-Sugano
Sumio Sugano
Kenta Nakai
Yutaka Suzuki

First Published June 13, 2007

Toxoplasma gondii" > Common inheritance of chromosome Ia associated with clonal expansion of Toxoplasma gondii

Asis Khan
Ulrike Böhme
Krystyna A. Kelly
Ellen Adlem
Karen Brooks
Mark Simmonds Karen Mungall Michael A. Quail Claire Arrowsmith Tracey Chillingworth Carol Churcher David Harris Matthew Collins Nigel Fosker Audrey Fraser Zahra Hance Kay Jagels Sharon Moule Lee Murphy Susan O'Neil Marie-Adele Rajandream David Saunders Kathy Seeger Sally Whitehead Thomas Mayr Xuenan Xuan Junichi Watanabe Yutaka Suzuki Hiroyuki Wakaguri Sumio Sugano Chihiro Sugimoto Ian Paulsen Aaron J. Mackey David S. Roos Neil Hall
... [+30 authors] ...,
Matthew Berriman
Bart Barrell
L. David Sibley
James W. Ajioka

First Published August 10, 2006

Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes

Kouichi Kimura
Ai Wakamatsu
Yutaka Suzuki
Toshio Ota
Tetsuo Nishikawa
Riu Yamashita Jun-ichi Yamamoto Mitsuo Sekine Katsuki Tsuritani Hiroyuki Wakaguri Shizuko Ishii Tomoyasu Sugiyama Kaoru Saito Yuko Isono Ryotaro Irie Norihiro Kushida Takahiro Yoneyama Rie Otsuka Katsuhiro Kanda Takahide Yokoi Hiroshi Kondo Masako Wagatsuma Katsuji Murakawa Shinichi Ishida Tadashi Ishibashi Asako Takahashi-Fujii Tomoo Tanase Keiichi Nagai
... [+23 authors] ...,
Hisashi Kikuchi
Kenta Nakai
Takao Isogai
Sumio Sugano

First Published December 12, 2005

Analysis of Small Human Proteins Reveals the Translation of Upstream Open Reading Frames of mRNAs

Masaaki Oyama
Chiharu Itagaki
Hiroko Hata
Yutaka Suzuki
Tomonori Izumi
Tohru Natsume
Toshiaki Isobe
Sumio Sugano

First Published October 15, 2004

Sequence Comparison of Human and Mouse Genes Reveals a Homologous Block Structure in the Promoter Regions

Yutaka Suzuki
Riu Yamashita
Matsuyuki Shirota
Yuta Sakakibara
Joe Chiba
Junko Mizushima-Sugano
Kenta Nakai
Sumio Sugano

First Published September 1, 2004

Fugu ESTs: New Resources for Transcription Analysis and Genome Annotation" > Fugu ESTs: New Resources for Transcription Analysis and Genome Annotation

Melody S. Clark
Yvonne J.K. Edwards
Dan Peterson
Sandra W. Clifton
Amanda J. Thompson
Masahide Sasaki Yutaka Suzuki Kiyoshi Kikuchi Shugo Watabe
... [+4 authors] ...,
Koichi Kawakami
Sumio Sugano
Greg Elgar
Stephen L. Johnson

First Published January 1, 2003

Identification and Characterization of the Potential Promoter Regions of 1031 Kinds of Human Genes

Yutaka Suzuki
Tatsuhiko Tsunoda
Jun Sese
Hirotoshi Taira
Junko Mizushima-Sugano
Hiroko Hata Toshio Ota Takao Isogai Toshihiro Tanaka Yusuke Nakamura Akira Suyama
... [+6 authors] ...,
Yoshiyuki Sakaki
Shinichi Morishita
Kousaku Okubo
Sumio Sugano

First Published April 11, 2001

CART Classification of Human 5′ UTR Sequences

Ramana V. Davuluri
Yutaka Suzuki
Sumio Sugano
Michael Q. Zhang

First Published November 8, 2000

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Your search for returned 25 results

3C sites in poly(A) RNA" > Nanopore direct RNA sequencing reveals METTL2A-mediated m³C sites in poly(A) RNA

Positive selective sweeps of epigenetic mutations regulating specialized metabolites in plants

Long-read sequencing for non-small-cell lung cancer genomes

Metabolic labeling of RNA using multiple ribonucleoside analogs enables the simultaneous evaluation of RNA synthesis and degradation rates

Plasmodium falciparum" > Corrigendum: Interactive transcriptome analysis of malaria patients and infecting Plasmodium falciparum

Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes

A GC-rich sequence feature in the 3′ UTR directs UPF1-dependent mRNA decay in mammalian cells

Ciona intestinalis" > Genome-wide identification and characterization of transcription start sites and promoters in the tunicate Ciona intestinalis

Plasmodium falciparum" > Interactive transcriptome analysis of malaria patients and infecting Plasmodium falciparum

Coelacanth genomes reveal signatures for evolutionary transition from water to land

High-resolution DNA methylome analysis of primordial germ cells identifies gender-specific reprogramming in mice

Genome-wide genetic variations are highly correlated with proximal DNA methylation patterns

Genome-wide determination of RNA stability reveals hundreds of short-lived noncoding transcripts in mammals

Comparative RNA sequencing reveals substantial genetic variation in endangered primates

Genome-wide characterization of transcriptional start sites in humans by integrative transcriptome analysis

Nucleotide composition-linked divergence of vertebrate core promoter architecture

Development and application of a phylogenomic toolkit: Resolving the evolutionary history of Madagascar’s lemurs

Distinct class of putative “non-conserved” promoters in humans: Comparative studies of alternative promoters of human and mouse genes

Toxoplasma gondii" > Common inheritance of chromosome Ia associated with clonal expansion of Toxoplasma gondii

Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes

Analysis of Small Human Proteins Reveals the Translation of Upstream Open Reading Frames of mRNAs

Sequence Comparison of Human and Mouse Genes Reveals a Homologous Block Structure in the Promoter Regions

Fugu ESTs: New Resources for Transcription Analysis and Genome Annotation" > Fugu ESTs: New Resources for Transcription Analysis and Genome Annotation

Identification and Characterization of the Potential Promoter Regions of 1031 Kinds of Human Genes

CART Classification of Human 5′ UTR Sequences

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Your search for returned 25 results