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Resource

Remodeling of epigenome and transcriptome landscapes with aging in mice reveals widespread induction of inflammatory responses

  • Bérénice A. Benayoun
  • Elizabeth A. Pollina
  • Param Priya Singh
  • Salah Mahmoudi
  • Itamar Harel
  • Kerriann M. Casey
  • Ben W. Dulken
  • Anshul Kundaje
  • Anne Brunet
  • First Published March 11, 2019
Resource

C. elegans" > Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans

  • Aaron C. Daugherty
  • Robin W. Yeo
  • Jason D. Buenrostro
  • William J. Greenleaf
  • Anshul Kundaje
  • Anne Brunet
  • First Published November 15, 2017
Method

Read clouds uncover variation in complex regions of the human genome

  • Alex Bishara
  • Yuling Liu
  • Ziming Weng
  • Dorna Kashef-Haghighi
  • Daniel E. Newburger
  • Robert West
  • Arend Sidow
  • Serafim Batzoglou
  • First Published August 18, 2015
Method

Parente2: a fast and accurate method for detecting identity by descent

  • Jesse M. Rodriguez
  • Sivan Bercovici
  • Lin Huang
  • Roy Frostig
  • Serafim Batzoglou
  • First Published October 1, 2014
Research

Genome evolution during progression to breast cancer

  • Daniel E. Newburger
  • Dorna Kashef-Haghighi
  • Ziming Weng
  • Raheleh Salari
  • Robert T. Sweeney
  • Alayne L. Brunner Shirley X. Zhu Xiangqian Guo Sushama Varma
  • ... [+4 authors] ...,
  • Megan L. Troxell
  • Robert B. West
  • Serafim Batzoglou
  • Arend Sidow
  • First Published April 8, 2013
Method

Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements

  • Anshul Kundaje
  • Sofia Kyriazopoulou-Panagiotopoulou
  • Max Libbrecht
  • Cheryl L. Smith
  • Debasish Raha
  • Elliott E. Winters
  • ... [+1 authors] ...,
  • Steven M. Johnson
  • Michael Snyder
  • Serafim Batzoglou
  • Arend Sidow
  • First Published September 5, 2012
Resource

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

  • Stephen G. Landt
  • Georgi K. Marinov
  • Anshul Kundaje
  • Pouya Kheradpour
  • Florencia Pauli
  • Serafim Batzoglou Bradley E. Bernstein Peter Bickel James B. Brown Philip Cayting Yiwen Chen Gilberto DeSalvo Charles Epstein Katherine I. Fisher-Aylor Ghia Euskirchen Mark Gerstein Jason Gertz Alexander J. Hartemink Michael M. Hoffman Vishwanath R. Iyer Youngsook L. Jung Subhradip Karmakar Manolis Kellis Peter V. Kharchenko Qunhua Li Tao Liu X. Shirley Liu Lijia Ma Aleksandar Milosavljevic Richard M. Myers Peter J. Park Michael J. Pazin Marc D. Perry Debasish Raha Timothy E. Reddy Joel Rozowsky Noam Shoresh Arend Sidow Matthew Slattery John A. Stamatoyannopoulos Michael Y. Tolstorukov Kevin P. White Simon Xi
  • ... [+38 authors] ...,
  • Peggy J. Farnham
  • Jason D. Lieb
  • Barbara J. Wold
  • Michael Snyder
  • First Published September 5, 2012
Method

Linking disease associations with regulatory information in the human genome

  • Marc A. Schaub
  • Alan P. Boyle
  • Anshul Kundaje
  • Serafim Batzoglou
  • Michael Snyder
  • First Published September 5, 2012
Resource

MicroRNA programs in normal and aberrant stem and progenitor cells

  • Christopher P. Arnold
  • Ruoying Tan
  • Baiyu Zhou
  • Si-Biao Yue
  • Steven Schaffert
  • Joseph R. Biggs Regis Doyonnas Miao-Chia Lo John M. Perry Valérie M. Renault Alessandra Sacco Tim Somervaille Patrick Viatour Anne Brunet Michael L. Cleary Linheng Li Julien Sage
  • ... [+12 authors] ...,
  • Dong-Er Zhang
  • Helen M. Blau
  • Caifu Chen
  • Chang-Zheng Chen
  • First Published March 30, 2011
Letter

Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes

  • David L. Goode
  • Gregory M. Cooper
  • Jeremy Schmutz
  • Mark Dickson
  • Eidelyn Gonzales
  • Ming Tsai Kalpana Karra
  • ... [+2 authors] ...,
  • Eugene Davydov
  • Serafim Batzoglou
  • Richard M. Myers
  • Arend Sidow
  • First Published January 12, 2010
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