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Crosstalk between alternative polyadenylation and miRNAs in the regulation of protein translational efficiency

Yonggui Fu
Liutao Chen
Chengyong Chen
Yutong Ge
Mingjing Kang
Zili Song Jingwen Li Yuchao Feng Zhanfeng Huo
... [+4 authors] ...,
Guopei He
Mengmeng Hou
Shangwu Chen
Anlong Xu

First Published September 18, 2018

Read clouds uncover variation in complex regions of the human genome

Alex Bishara
Yuling Liu
Ziming Weng
Dorna Kashef-Haghighi
Daniel E. Newburger
Robert West
Arend Sidow
Serafim Batzoglou

First Published August 18, 2015

Parente2: a fast and accurate method for detecting identity by descent

Jesse M. Rodriguez
Sivan Bercovici
Lin Huang
Roy Frostig
Serafim Batzoglou

First Published October 1, 2014

Genome evolution during progression to breast cancer

Daniel E. Newburger
Dorna Kashef-Haghighi
Ziming Weng
Raheleh Salari
Robert T. Sweeney
Alayne L. Brunner Shirley X. Zhu Xiangqian Guo Sushama Varma
... [+4 authors] ...,
Megan L. Troxell
Robert B. West
Serafim Batzoglou
Arend Sidow

First Published April 8, 2013

Dynamic landscape of tandem 3′ UTRs during zebrafish development

Yuxin Li
Yu Sun
Yonggui Fu
Mengzhen Li
Guangrui Huang
Chenxu Zhang Jiahui Liang Shengfeng Huang Gaoyang Shen
... [+4 authors] ...,
Shaochun Yuan
Liangfu Chen
Shangwu Chen
Anlong Xu

First Published September 5, 2012

Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements

Anshul Kundaje
Sofia Kyriazopoulou-Panagiotopoulou
Max Libbrecht
Cheryl L. Smith
Debasish Raha
Elliott E. Winters
... [+1 authors] ...,
Steven M. Johnson
Michael Snyder
Serafim Batzoglou
Arend Sidow

First Published September 5, 2012

Linking disease associations with regulatory information in the human genome

Marc A. Schaub
Alan P. Boyle
Anshul Kundaje
Serafim Batzoglou
Michael Snyder

First Published September 5, 2012

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

Stephen G. Landt
Georgi K. Marinov
Anshul Kundaje
Pouya Kheradpour
Florencia Pauli
Serafim Batzoglou Bradley E. Bernstein Peter Bickel James B. Brown Philip Cayting Yiwen Chen Gilberto DeSalvo Charles Epstein Katherine I. Fisher-Aylor Ghia Euskirchen Mark Gerstein Jason Gertz Alexander J. Hartemink Michael M. Hoffman Vishwanath R. Iyer Youngsook L. Jung Subhradip Karmakar Manolis Kellis Peter V. Kharchenko Qunhua Li Tao Liu X. Shirley Liu Lijia Ma Aleksandar Milosavljevic Richard M. Myers Peter J. Park Michael J. Pazin Marc D. Perry Debasish Raha Timothy E. Reddy Joel Rozowsky Noam Shoresh Arend Sidow Matthew Slattery John A. Stamatoyannopoulos Michael Y. Tolstorukov Kevin P. White Simon Xi
... [+38 authors] ...,
Peggy J. Farnham
Jason D. Lieb
Barbara J. Wold
Michael Snyder

First Published September 5, 2012

HaploMerger: Reconstructing allelic relationships for polymorphic diploid genome assemblies

Shengfeng Huang
Zelin Chen
Guangrui Huang
Ting Yu
Ping Yang
Jie Li
... [+1 authors] ...,
Yonggui Fu
Shaochun Yuan
Shangwu Chen
Anlong Xu

First Published May 3, 2012

Differential genome-wide profiling of tandem 3′ UTRs among human breast cancer and normal cells by high-throughput sequencing

Yonggui Fu
Yu Sun
Yuxin Li
Jie Li
Xingqiang Rao
Chong Chen
Anlong Xu

First Published April 7, 2011

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