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Research

Long-read genome sequencing and variant reanalysis increase diagnostic yield in neurodevelopmental disorders

  • Susan M. Hiatt
  • James M.J. Lawlor
  • Lori H. Handley
  • Donald R. Latner
  • Zachary T. Bonnstetter
  • Candice R. Finnila Michelle L. Thompson Lori Beth Boston Melissa Williams Ivan Rodriguez Nunez Jerry Jenkins Whitley V. Kelley E. Martina Bebin Michael A. Lopez Anna C.E. Hurst
  • ... [+10 authors] ...,
  • Bruce R. Korf
  • Jeremy Schmutz
  • Jane Grimwood
  • Gregory M. Cooper
  • First Published September 19, 2024
Resource

Allele-specific transcription factor binding across human brain regions offers mechanistic insight into eQTLs

  • Ashlyn G. Anderson
  • Belle A. Moyers
  • Jacob M. Loupe
  • Ivan Rodriguez-Nunez
  • Stephanie A. Felker
  • James M.J. Lawlor William E. Bunney Blynn G. Bunney Preston M. Cartagena Adolfo Sequeira Stanley J. Watson
  • ... [+6 authors] ...,
  • Huda Akil
  • Eric M. Mendenhall
  • Gregory M. Cooper
  • Richard M. Myers
  • First Published August 16, 2024
Method

cis-regulatory elements" > Probabilistic association of differentially expressed genes with cis-regulatory elements

  • Brian S. Roberts
  • Ashlyn G. Anderson
  • E. Christopher Partridge
  • Gregory M. Cooper
  • Richard M. Myers
  • First Published April 17, 2024
Research

Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands

  • Brian S. Roberts
  • E. Christopher Partridge
  • Bryan A. Moyers
  • Vikram Agarwal
  • Kimberly M. Newberry
  • Beth K. Martin
  • Jay Shendure
  • Richard M. Myers
  • Gregory M. Cooper
  • First Published April 20, 2021
Corrigendum

Corrigendum: A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

  • Fumitaka Inoue
  • Martin Kircher
  • Beth Martin
  • Gregory M. Cooper
  • Daniela M. Witten
  • Michael T. McManus
  • Nadav Ahituv
  • Jay Shendure
  • First Published May 1, 2018
Research

CCAT2 induce myeloid malignancies via unique SNP-specific RNA mutations" > Cancer-associated rs6983267 SNP and its accompanying long noncoding RNA CCAT2 induce myeloid malignancies via unique SNP-specific RNA mutations

  • Maitri Y. Shah
  • Manuela Ferracin
  • Valentina Pileczki
  • Baoqing Chen
  • Roxana Redis
  • Linda Fabris Xinna Zhang Cristina Ivan Masayoshi Shimizu Cristian Rodriguez-Aguayo Mihnea Dragomir Katrien Van Roosbroeck Maria Ines Almeida Maria Ciccone Daniela Nedelcu Maria Angelica Cortez Taghi Manshouri Steliana Calin Muharrem Muftuoglu Pinaki P. Banerjee Mustafa H. Badiwi Jan Parker-Thornburg Asha Multani James William Welsh Marcos Roberto Estecio Hui Ling Ciprian Tomuleasa Delia Dima Hui Yang Hector Alvarez M. James You Milan Radovich Elizabeth Shpall Muller Fabbri Katy Rezvani Leonard Girnita Ioana Berindan-Neagoe Anirban Maitra Srdan Verstovsek Riccardo Fodde
  • ... [+35 authors] ...,
  • Carlos Bueso-Ramos
  • Mihai Gagea
  • Guillermo Garcia Manero
  • George A. Calin
  • First Published March 22, 2018
Resource

A genome-wide interactome of DNA-associated proteins in the human liver

  • Ryne C. Ramaker
  • Daniel Savic
  • Andrew A. Hardigan
  • Kimberly Newberry
  • Gregory M. Cooper
  • Richard M. Myers
  • Sara J. Cooper
  • First Published October 11, 2017
Research

Altered hydroxymethylation is seen at regulatory regions in pancreatic cancer and regulates oncogenic pathways

  • Sanchari Bhattacharyya
  • Kith Pradhan
  • Nathaniel Campbell
  • Jozef Mazdo
  • Aparna Vasantkumar
  • Shahina Maqbool Tushar D. Bhagat Sonal Gupta Masako Suzuki Yiting Yu John M. Greally Ulrich Steidl James Bradner
  • ... [+8 authors] ...,
  • Meelad Dawlaty
  • Lucy Godley
  • Anirban Maitra
  • Amit Verma
  • First Published October 6, 2017
Research

A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

  • Fumitaka Inoue
  • Martin Kircher
  • Beth Martin
  • Gregory M. Cooper
  • Daniela M. Witten
  • Michael T. McManus
  • Nadav Ahituv
  • Jay Shendure
  • First Published November 9, 2016
Research

Callithrix jacchus genome" > Discovery of a new repeat family in the Callithrix jacchus genome

  • Miriam K. Konkel
  • Brygg Ullmer
  • Erika L. Arceneaux
  • Sreeja Sanampudi
  • Sarah A. Brantley
  • Robert Hubley
  • Arian F.A. Smit
  • Mark A. Batzer
  • First Published February 25, 2016
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