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Tree-based differential testing using inferential uncertainty for RNA-seq

  • Noor Pratap Singh
  • Euphy Y. Wu
  • Jason Fan
  • Michael I. Love
  • Rob Patro
  • First Published August 21, 2025

Drosophila melanogaster ovary" > Rapid evolution of piRNA clusters in the Drosophila melanogaster ovary

  • Satyam P. Srivastav
  • Cédric Feschotte
  • Andrew G. Clark
  • First Published May 15, 2024

Chromatin loop dynamics during cellular differentiation are associated with changes to both anchor and internal regulatory features

  • Marielle L. Bond
  • Eric S. Davis
  • Ivana Y. Quiroga
  • Anubha Dey
  • Manjari Kiran
  • Michael I. Love
  • Hyejung Won
  • Douglas H. Phanstiel
  • First Published September 12, 2023

Drosophila" > Evidence for the fixation of gene duplications by positive selection in Drosophila

  • Margarida Cardoso-Moreira
  • J. Roman Arguello
  • Srikanth Gottipati
  • L.G. Harshman
  • Jennifer K. Grenier
  • Andrew G. Clark
  • First Published April 12, 2016

Indigenous Arabs are descendants of the earliest split from ancient Eurasian populations

  • Juan L. Rodriguez-Flores
  • Khalid Fakhro
  • Francisco Agosto-Perez
  • Monica D. Ramstetter
  • Leonardo Arbiza
  • Thomas L. Vincent Amal Robay Joel A. Malek Karsten Suhre Lotfi Chouchane Ramin Badii Ajayeb Al-Nabet Al-Marri Charbel Abi Khalil Mahmoud Zirie Amin Jayyousi Jacqueline Salit
  • ... [+11 authors] ...,
  • Alon Keinan
  • Andrew G. Clark
  • Ronald G. Crystal
  • Jason G. Mezey
  • First Published January 4, 2016

ChIP-exo signal associated with DNA-binding motifs provides insight into the genomic binding of the glucocorticoid receptor and cooperating transcription factors

  • Stephan R. Starick
  • Jonas Ibn-Salem
  • Marcel Jurk
  • Céline Hernandez
  • Michael I. Love
  • Ho-Ryun Chung
  • Martin Vingron
  • Morgane Thomas-Chollier
  • Sebastiaan H. Meijsing
  • First Published February 26, 2015

Monodelphis domestica" > Chromosome-wide profiling of X-chromosome inactivation and epigenetic states in fetal brain and placenta of the opossum, Monodelphis domestica

  • Xu Wang
  • Kory C. Douglas
  • John L. VandeBerg
  • Andrew G. Clark
  • Paul B. Samollow
  • First Published September 24, 2013

Drosophila genomes" > Efficient identification of Y chromosome sequences in the human and Drosophila genomes

  • Antonio Bernardo Carvalho
  • Andrew G. Clark
  • First Published August 6, 2013

Random X inactivation in the mule and horse placenta

  • Xu Wang
  • Donald C. Miller
  • Andrew G. Clark
  • Douglas F. Antczak
  • First Published May 29, 2012

Drosophila simulans clade" > Genome sequencing reveals complex speciation in the Drosophila simulans clade

  • Daniel Garrigan
  • Sarah B. Kingan
  • Anthony J. Geneva
  • Peter Andolfatto
  • Andrew G. Clark
  • Kevin R. Thornton
  • Daven C. Presgraves
  • First Published April 13, 2012
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