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Resource

Construction and evaluation of a new rat reference genome assembly, GRCr8, from long reads and long-range scaffolding

  • Kai Li
  • Melissa L. Smith
  • J. Chris Blazier
  • Kelli J. Kochan
  • Jonathan M.D. Wood
  • Kerstin Howe Anne E. Kwitek Melinda R. Dwinell Hao Chen Julia L. Ciosek
  • ... [+5 authors] ...,
  • Patrick Masterson
  • Terence D. Murphy
  • Theodore S. Kalbfleisch
  • Peter A. Doris
  • First Published November 8, 2024
Research

Drosophila melanogaster ovary" > Rapid evolution of piRNA clusters in the Drosophila melanogaster ovary

  • Satyam P. Srivastav
  • Cédric Feschotte
  • Andrew G. Clark
  • First Published May 15, 2024
Resource

RefSeq Functional Elements as experimentally assayed nongenic reference standards and functional interactions in human and mouse

  • Catherine M. Farrell
  • Tamara Goldfarb
  • Sanjida H. Rangwala
  • Alexander Astashyn
  • Olga D. Ermolaeva
  • Vichet Hem Kenneth S. Katz Vamsi K. Kodali
  • ... [+3 authors] ...,
  • Frank Ludwig
  • Craig L. Wallin
  • Kim D. Pruitt
  • Terence D. Murphy
  • First Published December 7, 2021
Research

Yeast genetic interaction screen of human genes associated with amyotrophic lateral sclerosis: identification of MAP2K5 kinase as a potential drug target

  • Myungjin Jo
  • Ah Young Chung
  • Nozomu Yachie
  • Minchul Seo
  • Hyejin Jeon
  • Youngpyo Nam Yeojin Seo Eunmi Kim Quan Zhong
  • ... [+4 authors] ...,
  • Marc Vidal
  • Hae Chul Park
  • Frederick P. Roth
  • Kyoungho Suk
  • First Published June 8, 2017
Resource

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

  • Valerie A. Schneider
  • Tina Graves-Lindsay
  • Kerstin Howe
  • Nathan Bouk
  • Hsiu-Chuan Chen
  • Paul A. Kitts Terence D. Murphy Kim D. Pruitt Françoise Thibaud-Nissen Derek Albracht Robert S. Fulton Milinn Kremitzki Vincent Magrini Chris Markovic Sean McGrath Karyn Meltz Steinberg Kate Auger William Chow Joanna Collins Glenn Harden Timothy Hubbard Sarah Pelan Jared T. Simpson Glen Threadgold James Torrance Jonathan M. Wood Laura Clarke Sergey Koren Matthew Boitano Paul Peluso Heng Li Chen-Shan Chin Adam M. Phillippy Richard Durbin
  • ... [+29 authors] ...,
  • Richard K. Wilson
  • Paul Flicek
  • Evan E. Eichler
  • Deanna M. Church
  • First Published April 10, 2017
Research

Drosophila" > Evidence for the fixation of gene duplications by positive selection in Drosophila

  • Margarida Cardoso-Moreira
  • J. Roman Arguello
  • Srikanth Gottipati
  • L.G. Harshman
  • Jennifer K. Grenier
  • Andrew G. Clark
  • First Published April 12, 2016
Method

An extended set of yeast-based functional assays accurately identifies human disease mutations

  • Song Sun
  • Fan Yang
  • Guihong Tan
  • Michael Costanzo
  • Rose Oughtred
  • Jodi Hirschman Chandra L. Theesfeld Pritpal Bansal Nidhi Sahni Song Yi Analyn Yu Tanya Tyagi Cathy Tie David E. Hill Marc Vidal
  • ... [+10 authors] ...,
  • Brenda J. Andrews
  • Charles Boone
  • Kara Dolinski
  • Frederick P. Roth
  • First Published March 14, 2016
Research

Indigenous Arabs are descendants of the earliest split from ancient Eurasian populations

  • Juan L. Rodriguez-Flores
  • Khalid Fakhro
  • Francisco Agosto-Perez
  • Monica D. Ramstetter
  • Leonardo Arbiza
  • Thomas L. Vincent Amal Robay Joel A. Malek Karsten Suhre Lotfi Chouchane Ramin Badii Ajayeb Al-Nabet Al-Marri Charbel Abi Khalil Mahmoud Zirie Amin Jayyousi Jacqueline Salit
  • ... [+11 authors] ...,
  • Alon Keinan
  • Andrew G. Clark
  • Ronald G. Crystal
  • Jason G. Mezey
  • First Published January 4, 2016
Research

Monodelphis domestica" > Chromosome-wide profiling of X-chromosome inactivation and epigenetic states in fetal brain and placenta of the opossum, Monodelphis domestica

  • Xu Wang
  • Kory C. Douglas
  • John L. VandeBerg
  • Andrew G. Clark
  • Paul B. Samollow
  • First Published September 24, 2013
Method

Drosophila genomes" > Efficient identification of Y chromosome sequences in the human and Drosophila genomes

  • Antonio Bernardo Carvalho
  • Andrew G. Clark
  • First Published August 6, 2013
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