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Research

Long-read genome sequencing and variant reanalysis increase diagnostic yield in neurodevelopmental disorders

  • Susan M. Hiatt
  • James M.J. Lawlor
  • Lori H. Handley
  • Donald R. Latner
  • Zachary T. Bonnstetter
  • Candice R. Finnila Michelle L. Thompson Lori Beth Boston Melissa Williams Ivan Rodriguez Nunez Jerry Jenkins Whitley V. Kelley E. Martina Bebin Michael A. Lopez Anna C.E. Hurst
  • ... [+10 authors] ...,
  • Bruce R. Korf
  • Jeremy Schmutz
  • Jane Grimwood
  • Gregory M. Cooper
  • First Published September 19, 2024
Resource

Allele-specific transcription factor binding across human brain regions offers mechanistic insight into eQTLs

  • Ashlyn G. Anderson
  • Belle A. Moyers
  • Jacob M. Loupe
  • Ivan Rodriguez-Nunez
  • Stephanie A. Felker
  • James M.J. Lawlor William E. Bunney Blynn G. Bunney Preston M. Cartagena Adolfo Sequeira Stanley J. Watson
  • ... [+6 authors] ...,
  • Huda Akil
  • Eric M. Mendenhall
  • Gregory M. Cooper
  • Richard M. Myers
  • First Published August 16, 2024
Research

Drosophila melanogaster ovary" > Rapid evolution of piRNA clusters in the Drosophila melanogaster ovary

  • Satyam P. Srivastav
  • Cédric Feschotte
  • Andrew G. Clark
  • First Published May 15, 2024
Method

cis-regulatory elements" > Probabilistic association of differentially expressed genes with cis-regulatory elements

  • Brian S. Roberts
  • Ashlyn G. Anderson
  • E. Christopher Partridge
  • Gregory M. Cooper
  • Richard M. Myers
  • First Published April 17, 2024
Research

Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands

  • Brian S. Roberts
  • E. Christopher Partridge
  • Bryan A. Moyers
  • Vikram Agarwal
  • Kimberly M. Newberry
  • Beth K. Martin
  • Jay Shendure
  • Richard M. Myers
  • Gregory M. Cooper
  • First Published April 20, 2021
Method

Comparative Annotation Toolkit (CAT)—simultaneous clade and personal genome annotation

  • Ian T. Fiddes
  • Joel Armstrong
  • Mark Diekhans
  • Stefanie Nachtweide
  • Zev N. Kronenberg
  • Jason G. Underwood David Gordon Dent Earl Thomas Keane
  • ... [+4 authors] ...,
  • Evan E. Eichler
  • David Haussler
  • Mario Stanke
  • Benedict Paten
  • First Published June 8, 2018
Corrigendum

Corrigendum: A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

  • Fumitaka Inoue
  • Martin Kircher
  • Beth Martin
  • Gregory M. Cooper
  • Daniela M. Witten
  • Michael T. McManus
  • Nadav Ahituv
  • Jay Shendure
  • First Published May 1, 2018
Corrigendum

Corrigendum: Discovery and genotyping of structural variation from long-read haploid genome sequence data

  • John Huddleston
  • Mark J.P. Chaisson
  • Karyn Meltz Steinberg
  • Wes Warren
  • Kendra Hoekzema
  • David Gordon Tina A. Graves-Lindsay Katherine M. Munson Zev N. Kronenberg Laura Vives Paul Peluso Matthew Boitano
  • ... [+7 authors] ...,
  • Chen-Shin Chin
  • Jonas Korlach
  • Richard K. Wilson
  • Evan E. Eichler
  • First Published January 2, 2018
Resource

A genome-wide interactome of DNA-associated proteins in the human liver

  • Ryne C. Ramaker
  • Daniel Savic
  • Andrew A. Hardigan
  • Kimberly Newberry
  • Gregory M. Cooper
  • Richard M. Myers
  • Sara J. Cooper
  • First Published October 11, 2017
Research

Discovery and genotyping of structural variation from long-read haploid genome sequence data

  • John Huddleston
  • Mark J.P. Chaisson
  • Karyn Meltz Steinberg
  • Wes Warren
  • Kendra Hoekzema
  • David Gordon Tina A. Graves-Lindsay Katherine M. Munson Zev N. Kronenberg Laura Vives Paul Peluso Matthew Boitano
  • ... [+7 authors] ...,
  • Chen-Shin Chin
  • Jonas Korlach
  • Richard K. Wilson
  • Evan E. Eichler
  • First Published November 28, 2016
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