Search | Genome Research

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Research

Rearrangements of viral and human genomes at human papillomavirus integration events and their allele-specific impacts on cancer genome regulation

Vanessa L. Porter
Michelle Ng
Kieran O'Neill
Signe MacLennan
Richard D. Corbett
Luka Culibrk Zeid Hamadeh Marissa Iden Rachel Schmidt Shirng-Wern Tsaih Carolyn Nakisige Martin Origa Jackson Orem Glenn Chang Jeremy Fan Ka Ming Nip Vahid Akbari Simon K. Chan James Hopkins Richard A. Moore Eric Chuah Karen L. Mungall Andrew J. Mungall
... [+18 authors] ...,
Inanc Birol
Steven J.M. Jones
Janet S. Rader
Marco A. Marra

First Published December 5, 2024

Research

Rapid evolution of piRNA clusters in the Drosophila melanogaster ovary

Satyam P. Srivastav
Cédric Feschotte
Andrew G. Clark

First Published May 15, 2024

Research

High-resolution structural genomics reveals new therapeutic vulnerabilities in glioblastoma

Michael J. Johnston
Ana Nikolic
Nicoletta Ninkovic
Paul Guilhamon
Florence M.G. Cavalli
Steven Seaman Franz J. Zemp John Lee Aly Abdelkareem Katrina Ellestad Alex Murison Michelle M. Kushida Fiona J. Coutinho Yussanne Ma Andrew J. Mungall Richard Moore Marco A. Marra Michael D. Taylor Peter B. Dirks Trevor J. Pugh Sorana Morrissy
... [+16 authors] ...,
Bradley St Croix
Douglas J. Mahoney
Mathieu Lupien
Marco Gallo

First Published June 27, 2019

Method

Detection of long repeat expansions from PCR-free whole-genome sequence data

Egor Dolzhenko
Joke J.F.A. van Vugt
Richard J. Shaw
Mitchell A. Bekritsky
Marka van Blitterswijk
Giuseppe Narzisi Subramanian S. Ajay Vani Rajan Bryan R. Lajoie Nathan H. Johnson Zoya Kingsbury Sean J. Humphray Raymond D. Schellevis William J. Brands Matt Baker Rosa Rademakers Maarten Kooyman Gijs H.P. Tazelaar Michael A. van Es Russell McLaughlin William Sproviero Aleksey Shatunov Ashley Jones Ahmad Al Khleifat Alan Pittman Sarah Morgan Orla Hardiman Ammar Al-Chalabi Chris Shaw Bradley Smith Edmund J. Neo Karen Morrison Pamela J. Shaw Catherine Reeves Lara Winterkorn Nancy S. Wexler David E. Housman Christopher W. Ng Alina L. Li Ryan J. Taft
... [+35 authors] ...,
Leonard H. van den Berg
David R. Bentley
Jan H. Veldink
Michael A. Eberle

First Published September 8, 2017

Research

SMARCA4 regulates gene expression and higher-order chromatin structure in proliferating mammary epithelial cells

A. Rasim Barutcu
Bryan R. Lajoie
Andrew J. Fritz
Rachel P. McCord
Jeffrey A. Nickerson
Andre J. van Wijnen Jane B. Lian
... [+2 authors] ...,
Janet L. Stein
Job Dekker
Gary S. Stein
Anthony N. Imbalzano

First Published July 19, 2016

Research

Evidence for the fixation of gene duplications by positive selection in Drosophila

Margarida Cardoso-Moreira
J. Roman Arguello
Srikanth Gottipati
L.G. Harshman
Jennifer K. Grenier
Andrew G. Clark

First Published April 12, 2016

Research

Indigenous Arabs are descendants of the earliest split from ancient Eurasian populations

Juan L. Rodriguez-Flores
Khalid Fakhro
Francisco Agosto-Perez
Monica D. Ramstetter
Leonardo Arbiza
Thomas L. Vincent Amal Robay Joel A. Malek Karsten Suhre Lotfi Chouchane Ramin Badii Ajayeb Al-Nabet Al-Marri Charbel Abi Khalil Mahmoud Zirie Amin Jayyousi Jacqueline Salit
... [+11 authors] ...,
Alon Keinan
Andrew G. Clark
Ronald G. Crystal
Jason G. Mezey

First Published January 4, 2016

Method

TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data

Gavin Ha
Andrew Roth
Jaswinder Khattra
Julie Ho
Damian Yap
Leah M. Prentice Nataliya Melnyk Andrew McPherson Ali Bashashati Emma Laks Justina Biele Jiarui Ding Alan Le Jamie Rosner Karey Shumansky Marco A. Marra C. Blake Gilks
... [+12 authors] ...,
David G. Huntsman
Jessica N. McAlpine
Samuel Aparicio
Sohrab P. Shah

First Published July 24, 2014

Research

Chromosome-wide profiling of X-chromosome inactivation and epigenetic states in fetal brain and placenta of the opossum, Monodelphis domestica

Xu Wang
Kory C. Douglas
John L. VandeBerg
Andrew G. Clark
Paul B. Samollow

First Published September 24, 2013

Research

Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments

Vlad C. Seitan
Andre J. Faure
Ye Zhan
Rachel Patton McCord
Bryan R. Lajoie
Elizabeth Ing-Simmons Boris Lenhard Luca Giorgetti Edith Heard
... [+4 authors] ...,
Amanda G. Fisher
Paul Flicek
Job Dekker
Matthias Merkenschlager

First Published September 3, 2013

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