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GENCODE: The reference human genome annotation for The ENCODE Project

  • Jennifer Harrow
  • Adam Frankish
  • Jose M. Gonzalez
  • Electra Tapanari
  • Mark Diekhans
  • Felix Kokocinski Bronwen L. Aken Daniel Barrell Amonida Zadissa Stephen Searle If Barnes Alexandra Bignell Veronika Boychenko Toby Hunt Mike Kay Gaurab Mukherjee Jeena Rajan Gloria Despacio-Reyes Gary Saunders Charles Steward Rachel Harte Michael Lin Cédric Howald Andrea Tanzer Thomas Derrien Jacqueline Chrast Nathalie Walters Suganthi Balasubramanian Baikang Pei Michael Tress Jose Manuel Rodriguez Iakes Ezkurdia Jeltje van Baren Michael Brent David Haussler Manolis Kellis Alfonso Valencia
  • ... [+32 authors] ...,
  • Alexandre Reymond
  • Mark Gerstein
  • Roderic Guigó
  • Tim J. Hubbard
  • First Published September 5, 2012
Resource

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

  • Thomas Derrien
  • Rory Johnson
  • Giovanni Bussotti
  • Andrea Tanzer
  • Sarah Djebali
  • Hagen Tilgner Gregory Guernec David Martin Angelika Merkel David G. Knowles Julien Lagarde Lavanya Veeravalli Xiaoan Ruan Yijun Ruan Timo Lassmann Piero Carninci James B. Brown Leonard Lipovich Jose M. Gonzalez Mark Thomas Carrie A. Davis Ramin Shiekhattar Thomas R. Gingeras
  • ... [+18 authors] ...,
  • Tim J. Hubbard
  • Cedric Notredame
  • Jennifer Harrow
  • Roderic Guigó
  • First Published September 5, 2012
Method

Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome

  • Cédric Howald
  • Andrea Tanzer
  • Jacqueline Chrast
  • Felix Kokocinski
  • Thomas Derrien
  • Nathalie Walters Jose M. Gonzalez Adam Frankish Bronwen L. Aken Thibaut Hourlier Jan-Hinnerk Vogel Simon White Stephen Searle
  • ... [+8 authors] ...,
  • Jennifer Harrow
  • Tim J. Hubbard
  • Roderic Guigó
  • Alexandre Reymond
  • First Published September 5, 2012
LETTER

Structured RNAs in the ENCODE selected regions of the human genome

  • Stefan Washietl
  • Jakob S. Pedersen
  • Jan O. Korbel
  • Claudia Stocsits
  • Andreas R. Gruber
  • Jörg Hackermüller Jana Hertel Manja Lindemeyer Kristin Reiche Andrea Tanzer Catherine Ucla Carine Wyss Stylianos E. Antonarakis France Denoeud Julien Lagarde Jorg Drenkow Philipp Kapranov Thomas R. Gingeras Roderic Guigó Michael Snyder
  • ... [+15 authors] ...,
  • Mark B. Gerstein
  • Alexandre Reymond
  • Ivo L. Hofacker
  • Peter F. Stadler
  • First Published June 13, 2007
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