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Editorial

Long reads decipher genomes and transcriptomes and offer novel insights into biology and diseases

  • Ana Conesa
  • Alexander Hoischen
  • Fritz J. Sedlazeck
  • First Published April 14, 2025
Method

Quality assessment of long read data in multisample lrRNA-seq experiments using SQANTI-reads

  • Netanya Keil
  • Carolina Monzó
  • Lauren McIntyre
  • Ana Conesa
  • First Published March 3, 2025
Perspective

Notable challenges posed by long-read sequencing for the study of transcriptional diversity and genome annotation

  • Carolina Monzó
  • Adam Frankish
  • Ana Conesa
  • First Published March 3, 2025
Editorial

Revolutionizing genomics and medicine—one long molecule at a time

  • Ana Conesa
  • Alexander Hoischen
  • Fritz J. Sedlazeck
  • First Published November 20, 2024
Corrigendum

Corrigendum: SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification

  • Manuel Tardaguila
  • Lorena de la Fuente
  • Cristina Marti
  • Cécile Pereira
  • Francisco Jose Pardo-Palacios
  • Hector del Risco Marc Ferrell Maravillas Mellado Marissa Macchietto Kenneth Verheggen Mariola Edelmann Iakes Ezkurdia Jesus Vazquez Michael Tress Ali Mortazavi
  • ... [+10 authors] ...,
  • Lennart Martens
  • Susana Rodriguez-Navarro
  • Victoria Moreno-Manzano
  • Ana Conesa
  • First Published July 2, 2018
Method

SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification

  • Manuel Tardaguila
  • Lorena de la Fuente
  • Cristina Marti
  • Cécile Pereira
  • Francisco Jose Pardo-Palacios
  • Hector del Risco Marc Ferrell Maravillas Mellado Marissa Macchietto Kenneth Verheggen Mariola Edelmann Iakes Ezkurdia Jesus Vazquez Michael Tress Ali Mortazavi
  • ... [+10 authors] ...,
  • Lennart Martens
  • Susana Rodriguez-Navarro
  • Victoria Moreno-Manzano
  • Ana Conesa
  • First Published February 9, 2018
Research

Disease-specific biases in alternative splicing and tissue-specific dysregulation revealed by multitissue profiling of lymphocyte gene expression in type 1 diabetes

  • Jeremy R.B. Newman
  • Ana Conesa
  • Matthew Mika
  • Felicia N. New
  • Suna Onengut-Gumuscu
  • Mark A. Atkinson
  • Stephen S. Rich
  • Lauren M. McIntyre
  • Patrick Concannon
  • First Published October 12, 2017
Perspective

Translating cancer ‘omics’ to improved outcomes

  • Emily A. Vucic
  • Kelsie L. Thu
  • Keith Robison
  • Leszek A. Rybaczyk
  • Raj Chari
  • Carlos E. Alvarez
  • Wan L. Lam
  • First Published February 1, 2012
Resource

Differential expression in RNA-seq: A matter of depth

  • Sonia Tarazona
  • Fernando García-Alcalde
  • Joaquín Dopazo
  • Alberto Ferrer
  • Ana Conesa
  • First Published September 8, 2011
Resource

The completion of the Mammalian Gene Collection (MGC)

  • Gary Temple
  • Daniela S. Gerhard
  • Rebekah Rasooly
  • Elise A. Feingold
  • Peter J. Good
  • Cristen Robinson Allison Mandich Jeffrey G. Derge Jeanne Lewis Debonny Shoaf Francis S. Collins Wonhee Jang Lukas Wagner Carolyn M. Shenmen Leonie Misquitta Carl F. Schaefer Kenneth H. Buetow Tom I. Bonner Linda Yankie Ming Ward Lon Phan Alex Astashyn Garth Brown Catherine Farrell Jennifer Hart Melissa Landrum Bonnie L. Maidak Michael Murphy Terence Murphy Bhanu Rajput Lillian Riddick David Webb Janet Weber Wendy Wu Kim D. Pruitt Donna Maglott Adam Siepel Brona Brejova Mark Diekhans Rachel Harte Robert Baertsch Jim Kent David Haussler Michael Brent Laura Langton Charles L.G. Comstock Michael Stevens Chaochun Wei Marijke J. van Baren Kourosh Salehi-Ashtiani Ryan R. Murray Lila Ghamsari Elizabeth Mello Chenwei Lin Christa Pennacchio Kirsten Schreiber Nicole Shapiro Amber Marsh Elizabeth Pardes Troy Moore Anita Lebeau Mike Muratet Blake Simmons David Kloske Stephanie Sieja James Hudson Praveen Sethupathy Michael Brownstein Narayan Bhat Joseph Lazar Howard Jacob Chris E. Gruber Mark R. Smith John McPherson Angela M. Garcia Preethi H. Gunaratne Jiaqian Wu Donna Muzny Richard A. Gibbs Alice C. Young Gerard G. Bouffard Robert W. Blakesley Jim Mullikin Eric D. Green Mark C. Dickson Alex C. Rodriguez Jane Grimwood Jeremy Schmutz Richard M. Myers Martin Hirst Thomas Zeng Kane Tse Michelle Moksa Merinda Deng Kevin Ma Diana Mah Johnson Pang Greg Taylor Eric Chuah Athena Deng Keith Fichter Anne Go Stephanie Lee Jing Wang Malachi Griffith Ryan Morin Richard A. Moore Michael Mayo Sarah Munro Susan Wagner Steven J.M. Jones Robert A. Holt Marco A. Marra Sun Lu Shuwei Yang James Hartigan Marcus Graf Ralf Wagner Stanley Letovksy Jacqueline C. Pulido Keith Robison Dominic Esposito James Hartley
  • ... [+118 authors] ...,
  • Vanessa E. Wall
  • Ralph F. Hopkins
  • Osamu Ohara
  • Stefan Wiemann
  • First Published September 18, 2009
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