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Loss of epigenetic suppression of retrotransposons with oncogenic potential in aging mammary luminal epithelial cells

  • Parijat Senapati
  • Masaru Miyano
  • Rosalyn W. Sayaman
  • Mudaser Basam
  • Amy Leung
  • Mark A. LaBarge
  • Dustin E. Schones
  • First Published July 18, 2023

Accurate sequencing of DNA motifs able to form alternative (non-B) structures

  • Matthias H. Weissensteiner
  • Marzia A. Cremona
  • Wilfried M. Guiblet
  • Nicholas Stoler
  • Robert S. Harris
  • Monika Cechova
  • ... [+1 authors] ...,
  • Kristin A. Eckert
  • Francesca Chiaromonte
  • Yi-Fei Huang
  • Kateryna D. Makova
  • First Published July 11, 2023

Selection and thermostability suggest G-quadruplexes are novel functional elements of the human genome

  • Wilfried M. Guiblet
  • Michael DeGiorgio
  • Xiaoheng Cheng
  • Francesca Chiaromonte
  • Kristin A. Eckert
  • Yi-Fei Huang
  • Kateryna D. Makova
  • First Published June 29, 2021

Long-read sequencing technology indicates genome-wide effects of non-B DNA on polymerization speed and error rate

  • Wilfried M. Guiblet
  • Marzia A. Cremona
  • Monika Cechova
  • Robert S. Harris
  • Iva Kejnovská
  • Eduard Kejnovsky
  • Kristin Eckert
  • Francesca Chiaromonte
  • Kateryna D. Makova
  • First Published November 6, 2018

LTRs activated by Epstein-Barr virus–induced transformation of B cells alter the transcriptome

  • Amy Leung
  • Candi Trac
  • Hiroyuki Kato
  • Kevin R. Costello
  • Zhaoxia Chen
  • Rama Natarajan
  • Dustin E. Schones
  • First Published October 31, 2018

Corrigendum: A genome-wide analysis of common fragile sites: What features determine chromosomal instability in the human genome?

  • Arkarachai Fungtammasan
  • Erin Walsh
  • Francesca Chiaromonte
  • Kristin A. Eckert
  • Kateryna D. Makova
  • First Published October 3, 2016

A genome-wide analysis of common fragile sites: What features determine chromosomal instability in the human genome?

  • Arkarachai Fungtammasan
  • Erin Walsh
  • Francesca Chiaromonte
  • Kristin A. Eckert
  • Kateryna D. Makova
  • First Published March 28, 2012

A matter of life or death: How microsatellites emerge in and vanish from the human genome

  • Yogeshwar D. Kelkar
  • Kristin A. Eckert
  • Francesca Chiaromonte
  • Kateryna D. Makova
  • First Published October 12, 2011

Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration

  • Weisheng Wu
  • Yong Cheng
  • Cheryl A. Keller
  • Jason Ernst
  • Swathi Ashok Kumar
  • Tejaswini Mishra Christapher Morrissey Christine M. Dorman Kuan-Bei Chen Daniela Drautz Belinda Giardine Yoichiro Shibata Lingyun Song Max Pimkin Gregory E. Crawford Terrence S. Furey Manolis Kellis Webb Miller James Taylor Stephan C. Schuster Yu Zhang
  • ... [+16 authors] ...,
  • Francesca Chiaromonte
  • Gerd A. Blobel
  • Mitchell J. Weiss
  • Ross C. Hardison
  • First Published July 27, 2011

Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression

  • Yong Cheng
  • Weisheng Wu
  • Swathi Ashok Kumar
  • Duonan Yu
  • Wulan Deng
  • Tamara Tripic David C. King Kuan-Bei Chen Ying Zhang Daniela Drautz Belinda Giardine Stephan C. Schuster Webb Miller Francesca Chiaromonte
  • ... [+9 authors] ...,
  • Yu Zhang
  • Gerd A. Blobel
  • Mitchell J. Weiss
  • Ross C. Hardison
  • First Published November 3, 2009
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