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Research

Single-cell spatial transcriptomics reveals a dystrophic trajectory following a developmental bifurcation of myoblast cell fates in facioscapulohumeral muscular dystrophy

Lujia Chen
Xiangduo Kong
Kevin G. Johnston
Ali Mortazavi
Todd C. Holmes
Zhiqun Tan
Kyoko Yokomori
Xiangmin Xu

First Published May 22, 2024

Resource

The fine-scale recombination rate variation and associations with genomic features in a butterfly

Aleix Palahí i Torres
Lars Höök
Karin Näsvall
Daria Shipilina
Christer Wiklund
Roger Vila
Peter Pruisscher
Niclas Backström

First Published June 12, 2023

Resource

Integration of high-resolution promoter profiling assays reveals novel, cell type–specific transcription start sites across 115 human cell and tissue types

Jill E. Moore
Xiao-Ou Zhang
Shaimae I. Elhajjajy
Kaili Fan
Henry E. Pratt
Fairlie Reese
Ali Mortazavi
Zhiping Weng

First Published December 23, 2021

Research

Tissue-specific patterns of regulatory changes underlying gene expression differences among Ficedula flycatchers and their naturally occurring F₁ hybrids

Carina F. Mugal
Mi Wang
Niclas Backström
David Wheatcroft
Murielle Ålund
Marie Sémon
... [+1 authors] ...,
S. Eryn McFarlane
Ludovic Dutoit
Anna Qvarnström
Hans Ellegren

First Published November 3, 2020

Resource

Dynamics of microRNA expression during mouse prenatal development

Sorena Rahmanian
Rabi Murad
Alessandra Breschi
Weihua Zeng
Mark Mackiewicz
Brian Williams Carrie A. Davis Brian Roberts Sarah Meadows Dianna Moore Diane Trout Chris Zaleski Alex Dobin Lei-Hoon Sei Jorg Drenkow Alex Scavelli Thomas R. Gingeras
... [+12 authors] ...,
Barbara J. Wold
Richard M. Myers
Roderic Guigó
Ali Mortazavi

First Published October 23, 2019

Research

Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment

Theodore Gouliouris
Kathy E. Raven
Danesh Moradigaravand
Catherine Ludden
Francesc Coll
Beth Blane Plamena Naydenova Carolyne Horner Nicholas M. Brown
... [+4 authors] ...,
Jukka Corander
Direk Limmathurotsakul
Julian Parkhill
Sharon J. Peacock

First Published March 21, 2019

Corrigendum

Corrigendum: SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification

Manuel Tardaguila
Lorena de la Fuente
Cristina Marti
Cécile Pereira
Francisco Jose Pardo-Palacios
Hector del Risco Marc Ferrell Maravillas Mellado Marissa Macchietto Kenneth Verheggen Mariola Edelmann Iakes Ezkurdia Jesus Vazquez Michael Tress Ali Mortazavi
... [+10 authors] ...,
Lennart Martens
Susana Rodriguez-Navarro
Victoria Moreno-Manzano
Ana Conesa

First Published July 2, 2018

Method

SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification

Manuel Tardaguila
Lorena de la Fuente
Cristina Marti
Cécile Pereira
Francisco Jose Pardo-Palacios
Hector del Risco Marc Ferrell Maravillas Mellado Marissa Macchietto Kenneth Verheggen Mariola Edelmann Iakes Ezkurdia Jesus Vazquez Michael Tress Ali Mortazavi
... [+10 authors] ...,
Lennart Martens
Susana Rodriguez-Navarro
Victoria Moreno-Manzano
Ana Conesa

First Published February 9, 2018

Corrigendum

Corrigendum: Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland

Sandra Reuter
M. Estée Török
Matthew T.G. Holden
Rosy Reynolds
Kathy E. Raven
Beth Blane Tjibbe Donker Stephen D. Bentley David M. Aanensen Hajo Grundmann
... [+5 authors] ...,
Edward J. Feil
Brian G. Spratt
Julian Parkhill
Sharon J. Peacock

First Published September 1, 2017

Research

Systematic longitudinal survey of invasive Escherichia coli in England demonstrates a stable population structure only transiently disturbed by the emergence of ST131

Teemu Kallonen
Hayley J. Brodrick
Simon R. Harris
Jukka Corander
Nicholas M. Brown
Veronique Martin
Sharon J. Peacock
Julian Parkhill

First Published July 18, 2017

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