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Research

Yeast genetic interaction screen of human genes associated with amyotrophic lateral sclerosis: identification of MAP2K5 kinase as a potential drug target

  • Myungjin Jo
  • Ah Young Chung
  • Nozomu Yachie
  • Minchul Seo
  • Hyejin Jeon
  • Youngpyo Nam Yeojin Seo Eunmi Kim Quan Zhong
  • ... [+4 authors] ...,
  • Marc Vidal
  • Hae Chul Park
  • Frederick P. Roth
  • Kyoungho Suk
  • First Published June 8, 2017
Method

An extended set of yeast-based functional assays accurately identifies human disease mutations

  • Song Sun
  • Fan Yang
  • Guihong Tan
  • Michael Costanzo
  • Rose Oughtred
  • Jodi Hirschman Chandra L. Theesfeld Pritpal Bansal Nidhi Sahni Song Yi Analyn Yu Tanya Tyagi Cathy Tie David E. Hill Marc Vidal
  • ... [+10 authors] ...,
  • Brenda J. Andrews
  • Charles Boone
  • Kara Dolinski
  • Frederick P. Roth
  • First Published March 14, 2016
Research

Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia

  • Pedro G. Ferreira
  • Pedro Jares
  • Daniel Rico
  • Gonzalo Gómez-López
  • Alejandra Martínez-Trillos
  • Neus Villamor Simone Ecker Abel González-Pérez David G. Knowles Jean Monlong Rory Johnson Victor Quesada Sarah Djebali Panagiotis Papasaikas Mónica López-Guerra Dolors Colomer Cristina Royo Maite Cazorla Magda Pinyol Guillem Clot Marta Aymerich Maria Rozman Marta Kulis David Tamborero Anaïs Gouin Julie Blanc Marta Gut Ivo Gut Xose S. Puente David G. Pisano José Ignacio Martin-Subero Nuria López-Bigas Armando López-Guillermo
  • ... [+28 authors] ...,
  • Alfonso Valencia
  • Carlos López-Otín
  • Elías Campo
  • Roderic Guigó
  • First Published November 21, 2013
Resource

GENCODE: The reference human genome annotation for The ENCODE Project

  • Jennifer Harrow
  • Adam Frankish
  • Jose M. Gonzalez
  • Electra Tapanari
  • Mark Diekhans
  • Felix Kokocinski Bronwen L. Aken Daniel Barrell Amonida Zadissa Stephen Searle If Barnes Alexandra Bignell Veronika Boychenko Toby Hunt Mike Kay Gaurab Mukherjee Jeena Rajan Gloria Despacio-Reyes Gary Saunders Charles Steward Rachel Harte Michael Lin Cédric Howald Andrea Tanzer Thomas Derrien Jacqueline Chrast Nathalie Walters Suganthi Balasubramanian Baikang Pei Michael Tress Jose Manuel Rodriguez Iakes Ezkurdia Jeltje van Baren Michael Brent David Haussler Manolis Kellis Alfonso Valencia
  • ... [+32 authors] ...,
  • Alexandre Reymond
  • Mark Gerstein
  • Roderic Guigó
  • Tim J. Hubbard
  • First Published September 5, 2012
Research

Chimeras taking shape: Potential functions of proteins encoded by chimeric RNA transcripts

  • Milana Frenkel-Morgenstern
  • Vincent Lacroix
  • Iakes Ezkurdia
  • Yishai Levin
  • Alexandra Gabashvili
  • Jaime Prilusky Angela del Pozo
  • ... [+2 authors] ...,
  • Michael Tress
  • Rory Johnson
  • Roderic Guigo
  • Alfonso Valencia
  • First Published May 15, 2012
Resource

C. elegans ORFeome" > Large-scale RACE approach for proactive experimental definition of C. elegans ORFeome

  • Kourosh Salehi-Ashtiani
  • Chenwei Lin
  • Tong Hao
  • Yun Shen
  • David Szeto
  • Xinping Yang Lila Ghamsari HanJoo Lee Changyu Fan Ryan R. Murray Stuart Milstein Nenad Svrzikapa
  • ... [+7 authors] ...,
  • Michael E. Cusick
  • Frederick P. Roth
  • David E. Hill
  • Marc Vidal
  • First Published October 2, 2009
Resource

Analysis of the human E2 ubiquitin conjugating enzyme protein interaction network

  • Gabriel Markson
  • Christina Kiel
  • Russell Hyde
  • Stephanie Brown
  • Panagoula Charalabous
  • Anja Bremm Jennifer Semple Jonathan Woodsmith Simon Duley Kourosh Salehi-Ashtiani Marc Vidal
  • ... [+6 authors] ...,
  • David Komander
  • Luis Serrano
  • Paul Lehner
  • Christopher M. Sanderson
  • First Published June 23, 2009
Methods

Shifted Transversal Design smart-pooling for high coverage interactome mapping

  • Xiaofeng Xin
  • Jean-François Rual
  • Tomoko Hirozane-Kishikawa
  • David E. Hill
  • Marc Vidal
  • Charles Boone
  • Nicolas Thierry-Mieg
  • First Published May 15, 2009
Letter

The dynamic DNA methylomes of double-stranded DNA viruses associated with human cancer

  • Agustin F. Fernandez
  • Cecilia Rosales
  • Pilar Lopez-Nieva
  • Osvaldo Graña
  • Esteban Ballestar
  • Santiago Ropero Jesus Espada Sonia A. Melo Amaia Lujambio Mario F. Fraga Irene Pino Biola Javierre Francisco J. Carmona Francesco Acquadro Renske D.M. Steenbergen Peter J.F. Snijders Chris J. Meijer Pascal Pineau Anne Dejean Belen Lloveras Gabriel Capella Josep Quer Maria Buti Juan-Ignacio Esteban Helena Allende Francisco Rodriguez-Frias Xavier Castellsague Janos Minarovits Jordi Ponce Daniela Capello Gianluca Gaidano Juan Cruz Cigudosa Gonzalo Gomez-Lopez David G. Pisano Alfonso Valencia Miguel Angel Piris
  • ... [+31 authors] ...,
  • Francesc X. Bosch
  • Ellen Cahir-McFarland
  • Elliott Kieff
  • Manel Esteller
  • First Published February 10, 2009
LETTER

Saccharomyces cerevisiae predicted ORFeome" > Revisiting the Saccharomyces cerevisiae predicted ORFeome

  • Qian-Ru Li
  • Anne-Ruxandra Carvunis
  • Haiyuan Yu
  • Jing-Dong J. Han
  • Quan Zhong
  • Nicolas Simonis Stanley Tam Tong Hao Niels J. Klitgord Denis Dupuy Danny Mou Ilan Wapinski
  • ... [+7 authors] ...,
  • Aviv Regev
  • David E. Hill
  • Michael E. Cusick
  • Marc Vidal
  • First Published May 23, 2008
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