Search | Genome Research

Your search for returned 61 results

Method

Secure phasing of private genomes in a trusted execution environment with TX-Phase

Natnatee Dokmai
Kaiyuan Zhu
S. Cenk Sahinalp
Hyunghoon Cho

First Published November 12, 2025

Method

Genotyping of selected germline adaptive immune system loci using short-read sequencing data

Michael K.B. Ford
Ananth Hari
Meredith Yeager
Lisa Mirabello
Stephen Chanock
Ibrahim Numanagić
S. Cenk Sahinalp

First Published August 5, 2025

Method

Single-cell methylation sequencing data reveal succinct metastatic migration histories and tumor progression models

Yuelin Liu
Xuan Cindy Li
Farid Rashidi Mehrabadi
Alejandro A. Schäffer
Drew Pratt
David R. Crawford Salem Malikić Erin K. Molloy Vishaka Gopalan
... [+4 authors] ...,
Stephen M. Mount
Eytan Ruppin
Kenneth D. Aldape
S. Cenk Sahinalp

First Published June 14, 2023

Method

An efficient genotyper and star-allele caller for pharmacogenomics

Ananth Hari
Qinghui Zhou
Nina Gonzaludo
John Harting
Stuart A. Scott
Xiang Qin
Steve Scherer
S. Cenk Sahinalp
Ibrahim Numanagić

First Published January 19, 2023

Method

Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs

Michiel de Hoon
Alessandro Bonetti
Charles Plessy
Yoshinari Ando
Chung-Chau Hon
Yuri Ishizu Masayoshi Itoh Sachi Kato Dongyan Lin Sho Maekawa Mitsuyoshi Murata Hiromi Nishiyori Jay W. Shin Jens Stolte Ana Maria Suzuki Michihira Tagami Hazuki Takahashi Supat Thongjuea
... [+13 authors] ...,
Alistair R.R. Forrest
Yoshihide Hayashizaki
Juha Kere
Piero Carninci

First Published August 12, 2022

Research

Comparative transcriptomics of primary cells in vertebrates

Tanvir Alam
Saumya Agrawal
Jessica Severin
Robert S. Young
Robin Andersson
Erik Arner Akira Hasegawa Marina Lizio Jordan A. Ramilowski Imad Abugessaisa Yuri Ishizu Shohei Noma Hiroshi Tarui Martin S. Taylor Timo Lassmann Masayoshi Itoh Takeya Kasukawa Hideya Kawaji Luigi Marchionni Guojun Sheng Alistair R.R. Forrest
... [+16 authors] ...,
Levon M. Khachigian
Yoshihide Hayashizaki
Piero Carninci
Michiel J.L. de Hoon

First Published July 27, 2020

Method

PhISCS: a combinatorial approach for subperfect tumor phylogeny reconstruction via integrative use of single-cell and bulk sequencing data

Salem Malikic
Farid Rashidi Mehrabadi
Simone Ciccolella
Md. Khaledur Rahman
Camir Ricketts
Ehsan Haghshenas
... [+1 authors] ...,
Daniel Seidman
Faraz Hach
Iman Hajirasouliha
S. Cenk Sahinalp

First Published October 18, 2019

Research

Slightly deleterious genomic variants and transcriptome perturbations in Down syndrome embryonic selection

Konstantin Popadin
Stephan Peischl
Marco Garieri
M. Reza Sailani
Audrey Letourneau
Federico Santoni Samuel W. Lukowski Georgii A. Bazykin Sergey Nikolaev
... [+4 authors] ...,
Diogo Meyer
Laurent Excoffier
Alexandre Reymond
Stylianos E. Antonarakis

First Published December 13, 2017

Method

HIT'nDRIVE: patient-specific multidriver gene prioritization for precision oncology

Raunak Shrestha
Ermin Hodzic
Thomas Sauerwald
Phuong Dao
Kendric Wang
Jake Yeung Shawn Anderson
... [+2 authors] ...,
Fabio Vandin
Gholamreza Haffari
Colin C. Collins
S. Cenk Sahinalp

First Published July 18, 2017

Research

The frequent evolutionary birth and death of functional promoters in mouse and human

Robert S. Young
Yoshihide Hayashizaki
Robin Andersson
Albin Sandelin
Hideya Kawaji
Masayoshi Itoh Timo Lassmann
... [+2 authors] ...,
Piero Carninci
Wendy A. Bickmore
Alistair R. Forrest
Martin S. Taylor

First Published July 30, 2015

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