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Research

Enhancers with tissue-specific activity are enriched in intronic regions

  • First Published July 21, 2021
Corrigendum

Corrigendum: Functional annotation of human long noncoding RNAs via molecular phenotyping

  • First Published September 14, 2020
Resource

A limited set of transcriptional programs define major cell types

  • First Published July 29, 2020
Resource

Functional annotation of human long noncoding RNAs via molecular phenotyping

  • First Published July 27, 2020
Resource

Dynamics of microRNA expression during mouse prenatal development

  • First Published October 23, 2019
Research

Drosophila regeneration" > Damage-responsive elements in Drosophila regeneration

  • First Published November 20, 2018
Research

Slightly deleterious genomic variants and transcriptome perturbations in Down syndrome embryonic selection

  • First Published December 13, 2017
Research

Evolution of selenophosphate synthetases: emergence and relocation of function through independent duplications and recurrent subfunctionalization

  • First Published July 20, 2015
Erratum

BRF1 mutations alter RNA polymerase III–dependent transcription and cause neurodevelopmental anomalies" > BRF1 mutations alter RNA polymerase III–dependent transcription and cause neurodevelopmental anomalies

  • First Published April 1, 2015
Research

BRF1 mutations alter RNA polymerase III–dependent transcription and cause neurodevelopmental anomalies" > BRF1 mutations alter RNA polymerase III–dependent transcription and cause neurodevelopmental anomalies

  • First Published January 5, 2015
Research

Novel H3K4me3 marks are enriched at human- and chimpanzee-specific cytogenetic structures

  • First Published June 10, 2014
Research

Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia

  • First Published November 21, 2013
Method

Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome

  • First Published September 5, 2012
Resource

GENCODE: The reference human genome annotation for The ENCODE Project

  • First Published September 5, 2012
Research

Understanding transcriptional regulation by integrative analysis of transcription factor binding data

  • First Published September 5, 2012
Resource

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

  • First Published September 5, 2012
Research

Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs

  • First Published September 5, 2012
Method

Estimation of alternative splicing variability in human populations

  • First Published November 23, 2011
Research

Copy number variation modifies expression time courses

  • First Published November 17, 2010
Research

The effect of translocation-induced nuclear reorganization on gene expression

  • First Published March 8, 2010
RESOURCE

Islands of euchromatin-like sequence and expressed polymorphic sequences within the short arm of human chromosome 21

  • First Published September 25, 2007
LETTER

Structured RNAs in the ENCODE selected regions of the human genome

  • First Published June 13, 2007
ARTICLE

The DART classification of unannotated transcription within the ENCODE regions: Associating transcription with known and novel loci

  • First Published June 13, 2007
ARTICLE

Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions

  • First Published June 13, 2007
Methods

Improving gene annotation using peptide mass spectrometry

  • First Published December 22, 2006
LETTER

Tandem chimerism as a means to increase protein complexity in the human genome

  • First Published December 12, 2005
Chicken Special/Letters

Comparison of splice sites in mammals and chicken

  • First Published December 8, 2004
LETTER

Comparison of Human Chromosome 21 Conserved Nongenic Sequences (CNGs) With the Mouse and Dog Genomes Shows That Their Selective Constraint Is Independent of Their Genic Environment

  • First Published April 12, 2004
LETTER

Comparative Analysis of Amino Acid Repeats in Rodents and Humans

  • First Published April 1, 2004
METHODS

Comparative Gene Prediction in Human and Mouse

  • First Published January 1, 2003
METHODS

SGP-1: Prediction and Validation of Homologous Genes Based on Sequence Alignments

  • First Published September 1, 2001
LETTER

Kua, a Newly Identified Gene" > Fusion of the Human Gene for the Polyubiquitination Coeffector UEV1 with Kua, a Newly Identified Gene

  • First Published November 8, 2000
METHODS

An Assessment of Gene Prediction Accuracy in Large DNA Sequences

  • First Published October 1, 2000
METHODS

GeneID in Drosophila " > GeneID in Drosophila

  • First Published April 1, 2000
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